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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAACACATTATAGCAGAAAGGCAGAAAGCTCTTTACCTGGTTACGAGGAAGCTACCCCTATGGTGTTCTGTGGTCTTTTTCCAGTTGACGCTGACCAgtactgagtttttgtttttcattgttgactttttgctttttcattttgtatttttttttttcacacctggtctatgatggcag

Basic information

species Arabidopsis thaliana
transcript AT5G08650.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 11
CAATAACACATTATAGCAGAAAGGCAGAAAGCTCTTTACCTGGTTACGAGGAAGCTACCCCTATGGTGTTCTGTGGTCTTTTTCCAGTTGACGCTGACCAgtactgagtttttgtt--tttcattgttgactttttgctttttcattttgtatttttttttttca---cacctgg--tctatgatggcag-------------------
| || || || ||| |||||||||| || |  ||| | ||||| || |||||||| || |||||||||||||||||  | ||||| ||||| ||||||||||| | |  | |||||       || ||   || |||          ||||||| ||  | || |    | |||      || ||  |                     
CTATTACTCACTATGGCAGAAAGGCTGACAATTCTCTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGGTTGTTTCCTGTTGATGCTGACCAgtatttatctcttgttgaccctcttctttctttcttgagcaaaagagttgtattgttactcttgaatgtatctgaaactaatcatatccttactatcatttgttgtcag

upper sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 11
CAATAACACATTATAGCAGAAAGGCAGAAAGCTCTTTACCTGGTTACGAGGAAGCTACCCCTATGGTGTTCTGTGGTCTTTTTCCAGTTGACGCTGACCAgtactgagtttttgtt--tttcattgttgactttttgctttttcattttgtatttttttttttca---cacctgg--tctatgatggcag-------------------
|  | || || ||| |||||||||| || |  ||  | ||||| || |||||||| || |||||||||||||||||  | ||||| ||||| ||||||||||| | |  | |||||       || ||   || |||          ||||| | ||  | || |    | ||||     || ||  |                     
CTGTTACTCACTATGGCAGAAAGGCTGACAATTCACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGCTTGTTTCCTGTTGATGCTGACCAgtatttatctcttgttgaccctcttctttctttcttgagcaaaagaattgtaatgttactcttgaatgtatctggaactaatcatatccttattatcatttgttgtcag

upper sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA04G33480.1 (Glycine max), 5'ss of exon 5
CAATAACACATTATAGCAGAAAGGCAGAAAGCTCTTTACCTGGTTACGAGGAAGCTACCCCTATGGTGTTCTGTGGTCTTTTTCCAGTTGACGCTGACCAgtactgagtttttgtt--tttcattgttgactttttgctttttcattttgtatttttttttttca---cacctgg--tctatgatggcag-------------------
|  | || || ||| |||||||||| || |  ||  | ||||| || |||||||| || |||||||||| ||||||  | ||||| ||||| ||||||||||| | |  | |||||       || ||   || |||          ||||| | ||  | || |    | ||||     || ||  |                     
CTGTTACTCACTATGGCAGAAAGGCTGACAATTCACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTCCTGTGGCTTATTTCCTGTTGATGCTGACCAgtatttatctcttgttgaccctcttctttctttcttgagcaaaagaattgtaatgttactgttgaatgtatctggaactaatcatatccttattatcatttgttgttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125309219|gb|EL323304.1|EL323304
EST:     GAAGCTACCCCTATGGTGTTCTGTGGTCTTTTTCCAGTTGACGCTGACCA                         GTTTCCCGATCTTCGCGATGCATTAGGAAAAAACTGC
genomic: GAAGCTACCCCTATGGTGTTCTGTGGTCTTTTTCCAGTTGACGCTGACCAgtactgagtt ... atgatggcagGTTTCCCGATCTTCGCGATGCATT-GGAAAAA-CTGC