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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCGGATATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGgtaagctatatattcccgaaatagagaaactctcttcaaacaacatatattaagtctgaaaccaatgatgtatatatatcactgcag

Basic information

species Arabidopsis thaliana
transcript AT5G08380.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08380.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os10g35070.1 (Oryza sativa), 5'ss of exon 11
ACCCGGATATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGgtaa-gctatatattcccgaaatagagaaactctcttcaaacaacatatattaagtctgaaacc---aatgatgtatatatatcactgcag-----------
||||||| ||||| || || || ||||| |||||||| || ||||||||||| |||||||||||| | ||||| ||||| ||||||   | | || |  | ||  | |   ||   |  |  |      | || |||   |||       |||  |||| | | |  |    ||           
ACCCGGACATGCTGGAGGTTGGCAATGGCGGGATGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaaatgtgacggatgtcggataatgatggt--attcgtttctactaaagatgacgatgaaaatagtgtaaagaaaaaaagaaagttatcatcggt

upper sequence: AT5G08380.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA09G40990.1 (Glycine max), 5'ss of exon 11
ACCCGGATATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGgtaagctatatattcccgaaata---gagaaactctcttcaaacaacatatat-taagtctgaaaccaatgatgtatatatatcactgcag-------------
| || ||||||||||| |||||||||||||||||||||||| | || || |  || || |||||  |||||||  | || |||||||    | |||||      |     | | |||   ||     ||   |||| |||| ||     |  |  | | | |   ||| ||||              
ATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAGgtaatacttttattcttttgttttccaatatactgatttatgttaaagcatatataaggcttttttcctttcttttttttcctca-tgcaaaggtttattgcag

upper sequence: AT5G08380.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA18G44820.1 (Glycine max), 5'ss of exon 11
-ACCCGGATATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGgtaa-gctat-atattcccga-----aatagagaaactctcttcaaacaacatata-------ttaagtctgaaaccaatgatgtatatatatcactgcag
 | || ||||||||||| |||||||||||||||||||||||| | || || || || || |||||  |||||||  | || ||||||   |||| ||  |   |      || | |   | |    | |||  |  || |       ||     |     |  | ||| | |  | | | |||| 
GATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactactattattcttttgttttccaacatactgatttatgttaaagcatgtacaaggctttttttcctttttttccctcatgcaaaggt-ttattgca-

upper sequence: AT5G08380.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv10s0071g01100.t01 (Vitis vinifera), 5'ss of exon 11
ACCCGGATATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGgtaagctat--atattcccgaaatagagaaactctcttcaaacaacatatattaagtctgaaaccaatgatgtatatatatcactgcag
| || || |||||||| || |||||||| || ||||| || || || ||||||||||| |||||||||||||| || || |||||  | |    | ||| ||    |    | |       |      |  | | |  |  ||   | ||  |  |  |  || || |||||
ATCCTGACATGCTTGAGGTAGGAAATGGGGGAATGACTAATGATGAATACATAGTCCACTTCAGCATATGGGCTATTTCCAAGgtggggtcctgaaatttccttcttttgcacatggatgccttctttcccagagtctgcttg---ctaaccaactg-aggtaacattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080378|gb|DR376135.1|DR376135
EST:     TGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAG                         GCTCCTCTTCTACTTGGTTGTGACATAAGAAACATGACCAAAGAAACAATG
genomic: TGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGgtaagctata ... atcactgcagGCTCCTCTTCTACTTGGTTGTGACATAAGAAACATGACCAAAGAAACAATG
EST: gi|86075946|gb|DR371703.1|DR371703
EST:     TGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAG                         GCTCCTCTTCTACTTGGTTGTGACATAAGAAACATGACCAAAGAAACAATG
genomic: TGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGgtaagctata ... atcactgcagGCTCCTCTTCTACTTGGTTGTGACATAAGAAACATGACCAAAGAAACAATG