1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGTGCTCGTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAGgtgagttagagaaatacatacctagagaaagagaggagaaggtttaaagtatgttgacactgatggtcgtgttatgttgttatag
species | Arabidopsis thaliana |
transcript | AT5G03880.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTAGCCCCAAACGGCAGGTATTGCTTGAAGAAAAGCTGGTCACTTTCAG GTGCCTTACCTGGEST: gi|124787842|gb|EH877521.1|EH877521
genomic: GGTAGCCCCAAACGGCAGGTATTGCTTGA-GAAA-GCTGGTCACTTTCAGgtgagttaga ... gttgttatagGTGCCTTACCTGG
EST: GTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAG GTGCCTTACCTGGAAGATCCAAACACTGGEST: gi|86080278|gb|DR376035.1|DR376035
genomic: GTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAGgtgagttaga ... gttgttatagGTGCCTTACCTGGAAGATCCAAACACTGG
EST: GTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAG GTGCCTTACCTGGAAGATCCAAACACTGGAGTCGCGATGTTTGAGAGTGCAEST: gi|124728425|gb|EH819827.1|EH819827
genomic: GTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAGgtgagttaga ... gttgttatagGTGCCTTACCTGGAAGATCCAAACACTGGAGTCGCGATGTTTGAGAGTGCA
EST: GTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAG GTGCCTTACCTGGAAGATCCAAACACTG
genomic: GTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAGgtgagttaga ... gttgttatagGTGCCTTACCTGGAAGATCCAAACACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGCTCGTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAGgtgagttagagaaatacatacctagagaaagagaggagaaggtttaaagtatgttgacactgatggtcgtgttatgttgttatag
- - - - - - - - - - - - - - - - - - - - AAGCTG