1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGgtaataataatattctcacaagtgtgtctctaaaatccaatcatcttattgttttctttgacctctttttcag
species | Arabidopsis thaliana |
transcript | AT4G39460.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCAGTCACCACTCCGCTTGATGTTAATTAAGACAAGATTAATGGTTCAG GGATCAGCCAAAEST: gi|124922748|gb|EL001008.1|EL001008
genomic: AGCAGTCACCACTCCGCTTGATGTTA-TTAAGACAAGATTAATGGTTCAGgtaataataa ... tctttttcagGGATCAGCCAAA
EST: ATTAAGACAAGATTAATGGTTCAG GGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAEST: gi|86082868|gb|DR378627.1|DR378627
genomic: ATTAAGACAAGATTAATGGTTCAGgtaataataa ... tctttttcagGGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTA
EST: GAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG GGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAEST: gi|164108520|gb|ES180091.1|ES180091
genomic: GAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGgtaataataa ... tctttttcagGGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTA
EST: GAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG GGATCAGCCAAACAATATCAAGGAATEST: gi|125083934|gb|EL144328.1|EL144328
genomic: GAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGgtaataataa ... tctttttcagGGATCAGCCAAACAATATCAAGGAAT
EST: ATTAAGACAAGATTAATGGTTCAG GGATCTAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTEST: gi|124728087|gb|EH819489.1|EH819489
genomic: ATTAAGACAAGATTAATGGTTCAGgtaataataa ... tctttttcagGGATC-AGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGT
EST: GAGCAGTCACCACTCCGCTTGACGTTATTAAGACAAGATTAATGGTTCAG GGATCAGCCAAACAATATCAAGGAATCGTTG
genomic: GAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGgtaataataa ... tctttttcagGGATCAGCCAAACAATATCAAGGAATCGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGgtaataataatattctcacaagtgtgtctctaaaatccaatcatcttattgttttctttgacctctttttcag
- - - - - - GAGCAG