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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTACACCGACTTGGCTACCATATACGAGAGAGCAGGGCGAATTGAAGGGAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATGgtaattcttagtgctattttcatggtgttttgttttagcattattgcctttaattcgaatgatttttgtttgaagtaaacaataggtgataggaaacctt...

Basic information

species Arabidopsis thaliana
transcript AT4G38510.4
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 10
ATGTACACCGACTTGGCTACCATATACGAGAGAGCAGGGCGAATTGAAGGGAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATGgtaattcttagtgctattttcatggtgttttgttttagcattattgcctttaattcgaatgatttttgtttgaagtaaaca-ataggtgataggaaacctt-------
||||| || ||  |||| |||||||| ||| |||| ||||| |||||||| ||   ||| ||||| || |||||||||||| |||| ||||| || |||||||| |       || ||||  |  || ||| ||| ||  ||||   |   |   | | |   ||  || |    ||||||  | |   ||| ||    |        
ATGTATACTGATCTGGCAACCATATATGAGCGAGCTGGGCGTATTGAAGGAAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtg-----actgtttttgt--tgatttatttcagttttat-atcaccaccacaactatcttgagtattctataaacatgttgcgtataagatttttcctgaagt

upper sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 5'ss of exon 9
ATGTACACCGACTTGGCTACCATATACGAGAGAGCAGGGCGAATTGAAGGGAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATGgtaattcttagtgctattttcatggtgttttgttttagcattattgcctttaattc-gaatgatttttgtttga-agtaaacaataggtgataggaaacctt-----------------------------------------------------------------------------------
|||||||| ||  | || || || |||||  | || ||||||||||| ||  | ||||| || |||||||| ||||||||| |||| ||||| ||||||||| | |   |       |||     |  ||| || ||  | |        | ||   |||  |   || ||||| | |        |    ||    |||||                                                                                   
ATGTACACGGATCTTGCCACTATTTACGAACGTGCTGGGCGAATTGAGGGCCGCAAAGGGTCTATCACTCAGATTCCCATTCTAACTATGCCTAACGATGgttagttgcatcctccatttatcactaatttcttatattagtggacttagtgatggagaactacccttatttgatactttgtttctgtccttacttgaccttctacaggccttaatttatttctttgaattgtgatttttttttctttaggttactgagtttcgtgtatgtcgtactttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125257627|gb|EL271712.1|EL271712
EST:     TTTTAACCATGCCAAACGATG                         ATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAA
genomic: TTTTAACCATGCCAAACGATGgtaattctta ... atctgtccagATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAA
EST: gi|124893394|gb|EH972296.1|EH972296
EST:     GAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATG                         ATATCACGCATCCCACACCAGAT
genomic: GAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATGgtaattctta ... atctgtccagATATCACGCATCCCACACCAGAT
EST: gi|116450403|gb|EG492995.1|EG492995
EST:     GAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATG                         ATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAA
genomic: GAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATGgtaattctta ... atctgtccagATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAA
EST: gi|116450411|gb|EG493003.1|EG493003
EST:     GAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATG                         ATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAA
genomic: GAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATGgtaattctta ... atctgtccagATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAA
EST: gi|116476764|gb|EG519356.1|EG519356
EST:     GAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATG                         ATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAA
genomic: GAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATGgtaattctta ... atctgtccagATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAA