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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAACgtaagtctccatttagtatgatcaaatccttataacattatctcaggcttagtctatgtcgtacagtagcactcagacaaatactttctatgcgacactaacaagttaatacttgacgacacag

Basic information

species Arabidopsis thaliana
transcript AT4G36195.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36195.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G24270.1 (Glycine max), 5'ss of exon 11
CGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAACgtaagtctccatttagtatgatcaaatccttataacattatctcaggcttagtctatgtcgtacagtagcactcagacaaatactttctatgcgacactaacaagttaatacttgacgacacag
   | || ||  | ||  ||||||| ||||||||||| ||||||||||| |||||||| || ||||||||||| ||| |||  |||| || | |  |||     ||| |  || |  |    ||| |   | | ||  |  | |  |   |  |||       | |||     | ||  |||  |              
GTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATCgtgagttaccatataatttt-tcatgaatttagacaataacatt---cttggg--agggcgagccctggtgcagcggtaaag-----ttgtgccttggtgacttgttggtc-------------

upper sequence: AT4G36195.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G24290.1 (Glycine max), 5'ss of exon 10
CGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAACgtaagtctccatttagtatgatcaaatccttataacattatctcaggcttagtctatgtcgta-cagtagcactcagacaaatactttctatgcgacactaacaagttaatacttgacgacacag
   | || || || || |||||||| ||||| ||||| ||||| ||||||||||| || || |||||||||||  || |||  ||||||| | |  |  |||      ||    || |||  | |  ||  |||| |  | || |      || | ||| ||||| |   |  | |||| |                   
GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCATCCAAGCAAACTTCATCTCCTGATAgtgagttgccatttacttttcttcaatttagtcaatgacat-tcattcattatccttgtcatctctgtggtg----gatatata-tttctctaaaat-ccaacatgg------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079905|gb|DR375662.1|DR375662
EST:     GTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAAC                         TGCCTTCTTACATTGTGACTTGCCACAACTGTGGCCATGGAAGTGATCTCC
genomic: GTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAACgtaagtctcc ... gacgacacagTGCCTTCTTACATTGTGACTTGCCACAACTGTGGCCATGGAAGTGATCTCC