1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCCTTCTTACATTGTGACTTGCCACAACTGTGGCCATGGAAGTGATCTCCGTGGATGCCCTCAATCTCCCATGGTCATTGGAGgtatattactggcctcttctctctttccgatccctgaagtcaaagacagactagtattggaacaactgttaaaaaaatattatttttccctgcttttttcattctcatattcag
species | Arabidopsis thaliana |
transcript | AT4G36195.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCATGGAAGTGATCTCCGTGGATGCCCTCAATCTCCCATGGTCATTGGAG GTGATTCCAAGAATTEST: gi|164230530|gb|ES162941.1|ES162941
genomic: CCATGGAAGTGATCTCCGTGGATGCCCTCAATCTCCCATGGTCATTGGAGgtatattact ... tcatattcagGTGATTCCAAGAATT
EST: CCATGGAAGTGATCTCCGTGGATGCCCTCAATCTCCCATGGTCATTGGAG GTGATTCCAAGAATTEST: gi|86079905|gb|DR375662.1|DR375662
genomic: CCATGGAAGTGATCTCCGTGGATGCCCTCAATCTCCCATGGTCATTGGAGgtatattact ... tcatattcagGTGATTCCAAGAATT
EST: CCATGGAAGTGATCTCCGTGGATGCCCTCAATCTCCCATGGTCATTGGAG GTGATTCCAAGAATTGCAGTTCACCTGATGCAGTGAACAAAGTGAGGCAACEST: gi|164203326|gb|ES026695.1|ES026695
genomic: CCATGGAAGTGATCTCCGTGGATGCCCTCAATCTCCCATGGTCATTGGAGgtatattact ... tcatattcagGTGATTCCAAGAATTGCAGTTCACCTGATGCAGTGAACAAAGTGAGGCAAC
EST: CAATCTCCCATGGTCATTGGAG GTGATTCCAAGAATTGCAGTTCACCTGATGCAGTGAACAAAGTGAGGCAAC
genomic: CAATCTCCCATGGTCATTGGAGgtatattact ... tcatattcagGTGATTCCAAGAATTGCAGTTCACCTGATGCAGTGAACAAAGTGAGGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCTTCTTACATTGTGACTTGCCACAACTGTGGCCATGGAAGTGATCTCCGTGGATGCCCTCAATCTCCCATGGTCATTGGAGgtatattactggcctcttctctctttccgatccctgaagtcaaagacagactagtattggaacaactgttaaaaaaatattatttttccctgcttttttcattctcatattcag
- - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG