1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTGACAAGAACGATCCAAATGCCAGTAAGACACTAAACCGACTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAGgtacagtcttttatttaatcccaaaagctgcattaaatcctctcactaagaaactggtcacaagcacctataactaatcttccaagtattctagaataggatgatattatcataatctttctttctggttgggtttctgctgaatcattgtgtctcttcctttcag
species | Arabidopsis thaliana |
transcript | AT4G34640.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCCGTTCAGAAACTCTGCAGAGACGACTAGGAGTTCTTCAAAACAG AAAATCTTATGTTAATEST: gi|164012955|gb|ES136870.1|ES136870
genomic: TGAAGCCGTTCAGAAACTCTGCAGAGACG-CT-GGAGTTCTTCAAAACAGgtacagtctt ... ttcctttcagAAAATCTTATGTTAAT
EST: AGTTCTTCAAAACAG AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTTEST: gi|86078637|gb|DR374394.1|DR374394
genomic: AGTTCTTCAAAACAGgtacagtctt ... ttcctttcagAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT
EST: CTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAG AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTTEST: gi|125261539|gb|EL275624.1|EL275624
genomic: CTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAGgtacagtctt ... ttcctttcagAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT
EST: CTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAG AAAATCTTATGTTAATGACAAAGGACAAEST: gi|124827750|gb|EH912616.1|EH912616
genomic: CTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAGgtacagtctt ... ttcctttcagAAAATCTTATGTTAATGACAAAGGACAA
EST: AGTTCTTCAAAACAG AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT
genomic: AGTTCTTCAAAACAGgtacagtctt ... ttcctttcagAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGACAAGAACGATCCAAATGCCAGTAAGACACTAAACCGACTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAGgtacagtcttttatttaatcccaaaagctgcattaaatcctctcactaagaaactggtcacaagcacctataactaatcttccaagtattctagaataggatgatattatcataatctttctttctggttgggtttctgctgaatcattgtgtctcttcctttcag
- - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA