Sequence
atgc intronic sequence ATGC exonic sequenceTCCAAGCACTCAATTCTGTGGGTGACAGATTTCCCAATGTTCGAGTGGAATGAGCCAGAGCAGAGGCTTGAGgtatgtcgtttcataatttaatttcttgcatgagatgagattaatatccaaatatgttgtctaatatgaaaaggcatatctcttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G33760.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G33760.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA05G34820.1 (Glycine max), 5'ss of exon 11
TCCAAGCACTCAATTCTGTGGGTGACAGATTTCCCAATGTTCGAGTGGAATGAGCCAGAGCAGAGGCTTGAGgtatgtcgt----------ttcataatttaatttcttgcatgagatgagattaatatccaaat---atg-ttgtctaatat-gaaaaggcatatctcttcag
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GGCAGGCATTCAATTTTGTGGATAACTGATTTTCCGATGTTTGAGTGGAATGATCCAGAGCAGAGGCTTGAGgtctgttctgcttttaaaccttacagtatatttctcaatataataaatgtcttgttttggaattgtatgaccgttctttgtcgttaacagttatctttgc--
upper sequence: AT4G33760.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv03s0088g00500.t01 (Vitis vinifera), 5'ss of exon 11
TCCAAGCACTCAATTCTGTGGGTGACAGATTTCCCAATGTTCGAGTGGAATGAGCCAGAGCAGAGGCTTGAGgtatgtcgtttcataatttaatttcttgcatgagatgagattaatatccaaatat-gttgtctaatatgaaaaggcatatctcttcag------------
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TCCAGGCATTCAATTCTGTGGGTGACCGATTTTCCAATGTTTGAGTGGAACAGTGCAGAGCAGAGGCTTGAGgtgtgtctcatgtccatatcatgtcacatgcaattttagtaaaagaaaaaaaaattgttaccgcctatgaaagaaacttacttgtcactatggacaacctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164042676|gb|ES097348.1|ES097348EST: TGACAGATTTCCCAATGTTCGAGTGGAATGAGCCAGAGCAGAGGCTTGAG GCATTACATCATCCATTCACAGCTCCTAAGCCGGAAGAT
genomic: TGACAGATTTCCCAATGTTCGAGTGGAATGAGCCAGAGCAGAGGCTTGAGgtatgtcgtt ... atctcttcagGCATTACATCATCCATTCACAGCTCCTAAGCCGGAAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAAGCACTCAATTCTGTGGGTGACAGATTTCCCAATGTTCGAGTGGAATGAGCCAGAGCAGAGGCTTGAGgtatgtcgtttcataatttaatttcttgcatgagatgagattaatatccaaatatgttgtctaatatgaaaaggcatatctcttcag
- - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG