1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAATCTTGTCGAAGCAATGCCAACATCTCCAATATTTGTTGGGAGCAAGGCAAAACGGCTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCTgtaagtttccagttgttactcttcttttaaaccgctttgaaataccgaacttgttcttgagctttacatagtaatgctgatgcaagatcttggtttgtttctggctgaag
species | Arabidopsis thaliana |
transcript | AT4G33240.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCT TCGATTCACGTAATGGATTACTCCTTACTAGTCGGGGTAGATGAGGAAAGAEST: gi|125186812|gb|EL201766.1|EL201766
genomic: CTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCTgtaagtttcc ... ctggctgaagTCGATTCACGTAATGGATTACTCCTTACTAGTCGGGGTAGATGAGGAAAGA
EST: CAAAACGGCTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCT TCGATTCACGTAATGGATTACTCCTTA
genomic: CAAAACGGCTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCTgtaagtttcc ... ctggctgaagTCGATTCACGTAATGGATTACTCCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCTTGTCGAAGCAATGCCAACATCTCCAATATTTGTTGGGAGCAAGGCAAAACGGCTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCTgtaagtttccagttgttactcttcttttaaaccgctttgaaataccgaacttgttcttgagctttacatagtaatgctgatgcaagatcttggtttgtttctggctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG