1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTATGATAGCCTCGTTTCAAAAGACAAGAGCGGGAAGGACTGGTCCTTCATTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGgtatgccaacaattttaatactacacagattccctttggccttgtttagacttgtggtttgaagtttgtgctgttttcttttggtaacgagcag
species | Arabidopsis thaliana |
transcript | AT4G31990.4 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAG AGCGATAACATGACGGACAAATGGCATGTGTATATGACTAAAGACGGGAGGEST: gi|164096396|gb|ES202371.1|ES202371
genomic: TTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGgtatgccaac ... taacgagcagAGCGATAACATGACGGACAAATGGCATGTGTATATGACTAAAGACGGGAGG
EST: TGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAG AGCGATAACATGACGGACAAATGGCATGTGTATATGACTAAAGACGGGAGGEST: gi|125295879|gb|EL309964.1|EL309964
genomic: TGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGgtatgccaac ... taacgagcagAGCGATAACATGACGGACAAATGGCATGTGTATATGACTAAAGACGGGAGG
EST: TTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAG AGCGATAACATGACGGACAAATGEST: gi|125042553|gb|EL114822.1|EL114822
genomic: TTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGgtatgccaac ... taacgagcagAGCGATAACATGACGGACAAATG
EST: TTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAG AGCGATAACATGACGGACAAATGGCATGTEST: gi|86083205|gb|DR378964.1|DR378964
genomic: TTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGgtatgccaac ... taacgagcagAGCGATAACATGACGGACAAATGGCATGT
EST: TTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAATCTCAG AGCGATAACATGACGGACAAATGGCATGTGTATATGACTAAAGACGGGAGG
genomic: TTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGgtatgccaac ... taacgagcagAGCGATAACATGACGGACAAATGGCATGTGTATATGACTAAAGACGGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGATAGCCTCGTTTCAAAAGACAAGAGCGGGAAGGACTGGTCCTTCATTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGgtatgccaacaattttaatactacacagattccctttggccttgtttagacttgtggtttgaagtttgtgctgttttcttttggtaacgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA