Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATATGTTCTAGACTTTATTGCTGAGAGGAAGAACGTTGATGATATGCGCTCATCAATTAGAGATAATCGCTACAGAGACCAAAAACTTAGACTTCAGgtgtgtgtactctcaactcctaagtttttgacttgctccatcttttgttgatggttgtttcttattgttttcttaaaatgaaaatctaaatag

Basic information

species Arabidopsis thaliana
transcript AT4G30870.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30870.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv13s0019g01290.t01 (Vitis vinifera), 5'ss of exon 11
TGAATATGTTCTAGACTTTATTGCTGAGAGGAAGAACGTTGATGATATGCGCTCATCAATTAGAGATAATCGCTACAGAGACCAAAAACTTAGACTTCAGgtgtgtgtactctc---aactcctaagtttttgacttgctccatcttttgttgatggttgtttcttat-tgttttcttaaaatgaaaatctaaatag----
|||||||||||| || ||||||| |||||||||||| ||| ||||| | ||||  ||||| || |||||||||||||  || || ||  | || |||  |||     |  |  |   ||   || | |  || | |||     |  |  | | ||  | |||| | || ||| |   |     ||  |      |||    
TGAATATGTTCTTGATTTTATTGTTGAGAGGAAGAATGTTAATGATTTACGCTGTTCAATCAGGGATAATCGCTACAAGGATCAGAAGTTAAGGCTTTTGgtactgatttttactggaataactgaatggttta-ttgaaatttagtaaggtcattatcgtttgtcatatgtatgtgtggtgagaggactatgttagacct