Sequence
atgc intronic sequence ATGC exonic sequenceAGATATCTTCTGGCTATATGGAAAGCAACCCGTCCTTCCAATAGCGGAGAGGGTTGGGAAACAATGAGGAGAGAACTGTCCTTTCTGTACAGTCGTTTCTgtgagtacttacttctttggtgttttttttatcgattaaagcttcaaactcttttcttactgcatgtttatgatatgggtcatatataactgcttgattc...
Basic information
species | Arabidopsis thaliana |
transcript | AT4G28370.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G28370.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA12G33270.1 (Glycine max), 5'ss of exon 10
AGATATCTTCTGGCTATATGGAAAGCAACCCGTCCTTCCAATAGCGGAGAGGGTTGGGAAACAATGAGGAGAGAACTGTCCTTTCTGTACAGTCGTTTCTgtgagtacttacttct--ttggtgttttttttatcgattaaagcttcaaactcttttcttactgcatgtttatgatatgggtcatatataactgcttgattc
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AGATACCTCCTTGCTATCTGGAAGGCAAATAGGCCTTTGAGTAATGGGGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTgtaagtactcatctagaattaaattttgtcttgctaaatggttgtatgatctcatcaagagtt-ctcctttaagtcattggctccctgggatc-catgatca
upper sequence: AT4G28370.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA13G37150.1 (Glycine max), 5'ss of exon 11
AGATATCTTCTGGCTATATGGAAAGCAACCCGTCCTTCCAATAGCGGAGAGGGTTGGGAAACAATGAGGAGAGAACTGTCCTTTCTGTACAGTCGTTTCTgtgagtacttacttct--ttggtgttttttttatcgattaaagcttcaaactcttttcttactgcatgtttatgatatgggtcatatataactgcttgattc
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AGATACCTCCTTGCTATCTGGAAGGCAAATAGGCCTTTGAGTAATGGGGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTgtaagtactcatctagaattaaattttgtcttgctaaatggttgtatgatctcatcaagagtt-ctccttcgagtcattggctccctgggatc-catgatcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19878061|gb|AU238892.1|AU238892EST: ATGAGGAGAGAACTGTCCTTTCTGTACAGTCGTTTCT ATGGGATCCTTCTTGGAGGCATTTTGATAATGTACCAGTTCCACAACTACA
genomic: ATGAGGAGAGAACTGTCCTTTCTGTACAGTCGTTTCTgtgagtactt ... tattaaacagATGGGATCCTTCTTGGAGGCATTTTGATAATGTACCAGTTCCACAACTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATATCTTCTGGCTATATGGAAAGCAACCCGTCCTTCCAATAGCGGAGAGGGTTGGGAAACAATGAGGAGAGAACTGTCCTTTCTGTACAGTCGTTTCTgtgagtacttacttctttggtgttttttttatcgattaaagcttcaaactcttttcttactgcatgtttatgatatgggtcatatataactgcttgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA