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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTCACATTTGATAAGGTTTTTGTGCCAAGTGCATCACAAGAAGATGTTTTTGTAGAGATTTCTCAACTTGTCCAGAGCGCTCTTGATGGTTACAAGgtactatctgctttagcttagtttaactccctgtttacttatgtcttcattattcgattcctcaaattttcagagtgtattttggtaaaactgtctaactggtcaataaaagcacatgaatgatgaataatgttatgtttcactgtaccttcttggactaaaggttctattacacaattttcag

Basic information

species Arabidopsis thaliana
transcript AT4G27180.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G27180.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G114861_T01 (Zea mays), 5'ss of exon 10
TTGTTTCACATTTGATAAGGTTTTTGTGCCAAGTGCATCACAAGAAGATGTTTTTGTAGAGATTTCTCAACTTGTCCAGAGCGCTCTTGATGGTTACAAGgtactatctgctttagcttagtttaactccctgtttacttatgtcttcattattcgattcctcaaattttcagagtgtattttggtaaaactgtctaactggtcaataaaagcacatgaatgatgaataatgttatgtttcactgtaccttcttggactaaaggttctattacacaattttcag
 |  ||| ||| ||| ||||||||||  |   |||| ||||| |||||||| ||||| || || || ||||| ||||| || || |||||||| ||||||||||||    |||  || |    | |    ||  |   |  | | || | |||  || |  |||  ||  | |     || |||       |  | |||  |                                                                                  
CTCCTTCTCATATGACAAGGTTTTTGACCATGGTGCGTCACAGGAAGATGTGTTTGTGGAAATATCGCAACTAGTCCAAAGTGCCCTTGATGGGTACAAGgtacta---acttatgcatgacattatatgctaatgtatagtatattaagtat--gaattgtcatcttacctgttaaaatattgtcctttattcccaacatgatg-------------------------------------------------------------------------------

upper sequence: AT4G27180.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA06G41600.1 (Glycine max), 5'ss of exon 10
TTGTTTCACATTTGATAAGGTTTTTGTGCCAAGTGCATCACAAGAAGATGTTTTTGTAGAGATTTCTCAACTTGTCCAGAGCGCTCTTGATGGTTACAAGgtactatc----tgctttagcttagtttaactccctgtttacttatg-tcttcattattcgattcctcaaattttcagagtgtatt-ttggtaaaactgtctaactggtcaataaaagcacatgaatgatgaataatgttatgtttcactgtaccttcttggactaaaggttctattacacaattttcag
|  ||| ||||||||||| ||||||   |||   |||||||||||||| |||||||| || ||||| || ||||| || || ||||||||||||||||||||| | |     | |||  |     | |||  | || |||| |||   || ||| ||    |      |   ||||| |   ||||  | || ||  |                                                                                            
TGCTTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAGAAGTTTTTGTGGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTACAAGgtaatttaaaagttcttctgtcatctctaaagcactatttatttaaaatcatcaatacataaggatcaaccatttcacacactattactagtcaattttg------------------------------------------------------------------------------------------

upper sequence: AT4G27180.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA12G16580.1 (Glycine max), 5'ss of exon 11
TTGTTTCACATTTGATAAGGTTTTTGTGCCAAGTGCATCACAAGAAGATGTTTTTGTAGAGATTTCTCAACTTGTCCAGAGCGCTCTTGATGGTTACAAGgtactatc----tgctttagcttagtttaactccctgtttacttatgtcttcattattcgattcctcaaattttcagagtgtattttggtaaaactgtctaactggtcaataaaagcacatgaatgatgaataatgttatgtttcactgtaccttcttggactaaaggttctattacacaattttcag
|| ||| ||||||||||| ||||||   |||   |||||||||||||| |||||| |||| ||||| || ||||| || || ||||||||||||||||||||| | ||    | |||  |     | |||  | || || | |||       ||      ||   ||||   || |   || | | |    |  |  | |                                                                                        
TTCTTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAGAAGTTTTTCTAGAAATTTCACAGCTTGTACAAAGTGCTCTTGATGGTTACAAGgtaatttcaaagttcttctgtcatctctaaagcactattcatttaaaatcgtatatacatatggatcaaccatttaa--tgcactattactagtcaattttg--------------------------------------------------------------------------------------

upper sequence: AT4G27180.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA12G34330.1 (Glycine max), 5'ss of exon 10
TTGTTTCACATTTGATAAGGTTTTTGTGCCAAGTGCATCACAAGAAGATGTTTTTGTAGAGATTTCTCAACTTGTCCAGAGCGCTCTTGATGGTTACAAGgtactatctgctttagcttagtttaactccctgtttacttatgtcttcattattcgattcctcaaattttcagagtgtattttggtaaaactgtctaactggtcaataaaagcacatgaatgatgaataatgttatgtttcactgtaccttcttggactaaaggttctattacacaattttcag
|| |||||||| |||||| |||||||  ||   ||||||||||||||| |||||| | || ||||| || ||||| || || |||||||||||||| ||||||  ||||  |   | ||| | | | | |   ||   |||| |  | | ||||  ||  ||  ||    |||| ||  || | || | | | |  |||      | |||                                                                          
TTCTTTCACATATGATAAAGTTTTTGCACCTGATGCATCACAAGAAGAAGTTTTTATCGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTATAAGgta--atcttttgatggtta-tatcatttcaaattatattatatgcttactattgcataactgcaagcaacagaatgatttctagtcaga-tatagaac------acaaa--------------------------------------------------------------------------

upper sequence: AT4G27180.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA13G36230.2 (Glycine max), 5'ss of exon 11
TTGTTTCACATTTGATAAGGTTTTTGTGCCAAGTGCATCACAAGAAGATGTTTTTGTAGAGATTTCTCAACTTGTCCAGAGCGCTCTTGATGGTTACAAGgtactatctgctttagcttagtttaactccctgtttacttatgtcttcattattcgattcctcaaattttcagagtgtattttggtaaaactgtctaactggtcaataaaagcacatgaatgatgaataatgttatgtttcactgtaccttcttggactaaaggttctattacacaattttcag
|| |||||||| |||||| |||||||  ||   | ||||||||||||| |||||| | || ||||| || ||||| || || |||||||||||||| |||||| | |||              ||| | | | |||  ||   |||  || |||  |      | || ||       || | | | | | ||| | | |   | || |   ||   |                                                                   
TTCTTTCACATATGATAAAGTTTTTGCACCTGATACATCACAAGAAGAAGTTTTTATTGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTATAAGgtaatctct--------------taagttcgtcttttattccttctatatcatttcaaattatatatatt--atacatactattgcatagctg-cgaccaattgaacagttgctagt-------------------------------------------------------------------