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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTGTGTATTCTGGTGTGGATTTCTGTAAACGGTTATGTGGTGTCTCGGTGATTAGGAGgtactttcctatatcttagctttagtttatacaataggaacttccccatcctttcatatcccactctctcaccaacttgatggtgttttgaaataatgctag

Basic information

species Arabidopsis thaliana
transcript AT4G26510.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G034143_T03 (Zea mays), 5'ss of exon 12
GATGTGTGTATTCTGGTGTGGATTTCTGTAAACGGTTATGTGGTGTCTCGGTGATTAGGAGgtac-----tttcctatatcttagctttagtttatacaataggaacttccccatcctttcatatcccactctctcaccaacttgatggtgttttgaaataatgctag
||| ||| ||  |||||||||| ||||  ||| |||| ||||||||||| ||||| |||||||||     ||||||| |   ||  ||   | ||| |      |  |||        || ||  |  |  | ||||| ||               |  ||       
GATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAGTGATCAGGAGgtaccaacttttcctaaacaatatattctttgtatgcttgtttaggttctaaccgagttaatgacttaggcactcacaaaaggaggaaaaaggctatgta-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125244484|gb|EL258569.1|EL258569
EST:     TCTGGTGTGGATTTCTGTAAACGGTTATGTGGTGTCTCGGTGATTAGGAG                         TGGTGAGAGCATGGAGAATGCGTTACGAGCA
genomic: TCTGGTGTGGATTTCTGTAAACGGTTATGTGGTGTCTCGGTGATTAGGAGgtactttcct ... ataatgctagTGGTGAGAGCATGGAGAATGCGTTACGAGCA