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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGAGGAGCTTACAGCACGACCAGTAGCAATTGAATATGCTAGGAAATACCTAACTGAACTCAAAGAGgtactcagacattacatgattttgcagttttctcatgatcagaaaaaaaaaaaaagacaaactgctgagtttcaaccacatttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G16660.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125157634|gb|EL186609.1|EL186609
EST:     TAGCAATTGAATATGCTAGGAAATACCTAACTGAACTCAAAGAG                         ATCATAAAAGAATGGGAGACGAACAAAACTTGGCTTCCAAAAGAAAAAATC
genomic: TAGCAATTGAATATGCTAGGAAATACCTAACTGAACTCAAAGAGgtactcagac ... acatttgcagATCATAAAAGAATGGGAGACGAACAAAACTTGGCTTCCAAAAGAAAAAATC
EST: gi|86029396|gb|DR325149.1|DR325149
EST:     GACCAGTAGCAATTGAATATGCTAGGAAATACCTAACTGAACTCAAAGAG                         ATCATAAAAGAATGGGAGANGAACAAAACTTGGCTTCCAAAAGAAAAAATC
genomic: GACCAGTAGCAATTGAATATGCTAGGAAATACCTAACTGAACTCAAAGAGgtactcagac ... acatttgcagATCATAAAAGAATGGGAGACGAACAAAACTTGGCTTCCAAAAGAAAAAATC