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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCTTGTCCTCGGGAAATAGACAGgtaaacaagatatatttcctgtattatgattaaattaaaaagctactagttttgttctctttaactgatgtgaggacaatatgttttcctttgattttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G16630.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G16630.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 11
GGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCTTGTCCTCGGGAAATAGACAGgtaaa---caagat--atatttcctgta-ttatgattaaattaaaaag-------------ctactagttttgt---tctctttaactgatgtgaggacaatatgttttcctttgattttgcag------------------------------------------------------------
|| |||||||| |||||||||||||||||||| || | ||| ||||| || ||  |   |||||| |    | |||  |||||    |||  | || || || |     |             || |   ||||||   | || ||   || |      |  |||  | ||  | | |  ||                                                                
GGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGgtataatctatgatccatattggtagtaactctgcttgaaatgttgtgtgttattgtcttcctgcagtttttgtcactttcctttgttgctacataaatgataaatgttgatctcaccttaacatgatctctttctctgtatgggattcctgataatttatttatttattttttatgtattaag

upper sequence: AT4G16630.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 11
GGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCTTGTCCTCGGGAAATAGACAGgtaaa---caagat--atatttcctgta-ttatgattaaa-------------ttaaaaagctactagttttgt---tctctttaactgatgtgaggacaatatgttttcctttgattttgcag-------------------------------------------------------------------------
|| |||||||| |||||||||||||||||||| || | ||| ||||| || ||  |    ||||| |    | |||  |||||    |||  | || || ||             || |    || |   ||||||   | || || | || |         | |  || || |      || ||                                                                          
GGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGCGATCTTACTAGgtacaatctatgatccatattggtagtaactctgcttgaaatgttgcgtgttattgacttcctgcattttttgtcactttccttcattgctacataagttacaatttatcatacacgattacatgttgatctcgccttaaacatgatctctttctctctatggattcctgataactttatctttttttattatgaag

upper sequence: AT4G16630.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 11
GGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCTTGTCCTCGGGAAATAGACAGgtaaacaagata--tatttcctgtattatgattaaattaaaaagctactagttttgttctctttaactgatgtgaggacaatatgttttcctttgattttgcag
||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||  |   ||||||||     ||  | |||      || |  ||   ||    |  ||   |||       |  | | | |  ||    || |   |  |  | |   | |||  
GGACTTGACATAATTGGTGTTCAAACAGTTATAAACTATGCATGTCCTCGTGATCTTACCAGgtaaatttattaactttttttccctttttccttcgtttttttaaatat--gttgctaaaacaatgatttacttgtttgcatttattcgttatgttgatgtgc--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124723083|gb|EH814485.1|EH814485
EST:     ATTGGTGTTCAAACAGTTATAAATTATGCTTGTCCTCGGGAAATAGACAG                         TTATGTTCACAGAGTTGG
genomic: ATTGGTGTTCAAACAGTTATAAATTATGCTTGTCCTCGGGAAATAGACAGgtaaacaaga ... gattttgcagTTATGTTCACAGAGTTGG