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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCAAATTGTTGATTGAAGACCTTGGTGAGCTAAAACCAAGTATCTTTTGCGCCGTTCCTCGTGTCCTAGATCGAGTATACACAGgtatcaaatatttctcgagctcttgtataaaatgctttcatccaatgaagagcatcatatacttggtttcataagttcaaacccacttatatgtaatttattatatatctccaacag

Basic information

species Arabidopsis thaliana
transcript AT4G11030.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11030.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA01G43470.4 (Glycine max), 5'ss of exon 11
GATGTCAAATTGTTGATTGAAGACCTTGGTGAGCTAAAACCAAGTATCTTTTGCGCCGTTCCTCGTGTCCTAGATCGAGTATACACAGgta---tca-aatatttctcgagctcttgtataaaatgctttcatccaatgaagagcatcatatacttggtttcataagttcaaacccacttatatgtaatttattatatatctccaacag
|||||||||||||| ||||||||  |||| || |||||||||| ||| || || || ||||| ||||| || ||| |||| ||| ||||||   |||  | | |||||    | ||||  | | |    | |||     |  | ||| |||   ||| |   | || |   |   || |   |   |  |                   
GATGTCAAATTGTTAATTGAAGATGTTGGCGAACTAAAACCAACTATTTTCTGTGCTGTTCCCCGTGTGCTTGATAGAGTGTACTCAGgtaaactcatgaaaattctca--ttattgttgacagtttgatgatctttccataatcat-ataattttgatggtaaaattatgatttcagtaggacaaagcta------------------

upper sequence: AT4G11030.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 11
GATGTCAAATTGTTGATTGAAGACCTTGGTGAGCTAAAACCAAGTATCTTTTGCGCCGTTCCTCGTGTCCTAGATCGAGTATACACAGgtatcaaatatttctcgagctcttgtataaaatgctttcatccaatgaagagcatcatatacttggtttcataagttcaaacccacttatatgtaatttattatatatctccaacag
||||||||||| ||| |||||||| |||| ||||||||||| | ||| || || || |||||||| ||  ||||| |  ||||  |||||   || | |||||    |  ||| ||    |  ||   || |||   |   ||| | | |   || | ||||  |||| |  |   | |  |   | |  ||             
GATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAGgtgcaaattttttctta--catttgaatgtgctaattgagtctaattctg--tatctttttccaagtataataa--tcaatcagagaaacacttgcatcagaatca-----------