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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGCTCCGTTTCTCATTGCTCTTCCTGTGATTACTATCGGTTTCCACCGCTTCTGTAAAGGCCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAGgtcagtttcttctacgttatctagatttattatttctgtttagttcgatttttgtcactgtttggatcggttttacgagccccagaaatggcaaaatgttgattattttacag

Basic information

species Arabidopsis thaliana
transcript AT4G04340.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125284139|gb|EL298224.1|EL298224
EST:     GCTTCTGTAAAGGCCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAG                         GAAGCTATGATGAAAGATACATTGGAAAGAGC
genomic: GCTTCTGTAAAGGCCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAGgtcagtttct ... tattttacagGAAGCTATGATGAAAGATACATTGGAAAGAGC
EST: gi|125097305|gb|EL153808.1|EL153808
EST:     CCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAG                         GAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAAC
genomic: CCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAGgtcagtttct ... tattttacagGAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAAC
EST: gi|125233478|gb|EL247563.1|EL247563
EST:     TCCGTTACCCCTTACAG                         GAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAAC
genomic: TCCGTTACCCCTTACAGgtcagtttct ... tattttacagGAAGCTATGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAAC
EST: gi|124928974|gb|EL006565.1|EL006565
EST:     GCTTCTGTAAAGGCCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAG                         GAAGCTATGATGAAAGATACATTGGA
genomic: GCTTCTGTAAAGGCCGTTTCGAACCTGCCTTTGTCCGTTACCCCTTACAGgtcagtttct ... tattttacagGAAGCTATGATGAAAGATACATTGGA