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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGAAAATGTTGATTCAAATGGTTGAAACCGAGCTAGAGAAAAAGAAGACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACTTCTTTGGgtaatgaattagcctaaaacatttgttaataactaattagcgtcaacataatcatattctcattctcattgtgttttag

Basic information

species Arabidopsis thaliana
transcript AT4G04040.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124762470|gb|EH852600.1|EH852600
EST:     TCACACTTCTTTGG                         GTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTA
genomic: TCACACTTCTTTGGgtaatgaatt ... tgtgttttagGTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTA
EST: gi|125308426|gb|EL322511.1|EL322511
EST:     ACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACTTCTTTGG                         GTATGAAGGAAGATGCGGCTTACCTACAAA
genomic: ACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACTTCTTTGGgtaatgaatt ... tgtgttttagGTATGAAGGAAGATGCGGCTTACCTACAAA
EST: gi|124846532|gb|EH930969.1|EH930969
EST:     ACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACTTCTTTGG                         GTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTA
genomic: ACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACTTCTTTGGgtaatgaatt ... tgtgttttagGTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTA