1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAAGCCGGAGTTACAAAAGAACTGGAGCTAAATCTGTTGTCTTCACTTGATACTTTGAAAGTAAAAGATAAGAAAGATAGAGGAAGCATAACTCTTAAGgtatatagatcttccttgaataaactgcaaaccttttcttttcgctgattcctaaattgacttgaattgaag
species | Arabidopsis thaliana |
transcript | AT3G61050.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGCATAACTCTTAAG GTACATTATCATGAGTTCAACAAAGAGGAGCAAATGGCTGCGTTGGAAGAEST: gi|86074617|gb|DR370374.1|DR370374
genomic: AGGAAGCATAACTCTTAAGgtatatagat ... tgaattgaagGTACATTATCATGAGTTCAACAAAGAGGAGCAAATGGCTGCGTTGGAAGA
EST: ATACTTTGAAAGTAAAAGATAAGAAAGATAGAGGAAGCATAACTCTTAAG GTACATTATCATGAGTTCAACAAAGAGGAGCAAATGGCTGCGTTGGAAGACEST: gi|164011308|gb|ES010219.1|ES010219
genomic: ATACTTTGAAAGTAAAAGATAAGAAAGATAGAGGAAGCATAACTCTTAAGgtatatagat ... tgaattgaagGTACATTATCATGAGTTCAACAAAGAGGAGCAAATGGCTGCGTTGGAAGAC
EST: ATAC-TTGAAAGTAAAAGATAAGAAAGATAGAGGAAGCATAACTCTTAAG GTACATTATCATGAGTTCAACAAAGAGGAGCAAATGGCT
genomic: ATACTTTGAAAGTAAAAGATAAGAAAGATAGAGGAAGCATAACTCTTAAGgtatatagat ... tgaattgaagGTACATTATCATGAGTTCAACAAAGAGGAGCAAATGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGCCGGAGTTACAAAAGAACTGGAGCTAAATCTGTTGTCTTCACTTGATACTTTGAAAGTAAAAGATAAGAAAGATAGAGGAAGCATAACTCTTAAGgtatatagatcttccttgaataaactgcaaaccttttcttttcgctgattcctaaattgacttgaattgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA