1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTGATGGGTTCCCAACAATCCTGTTCTTCCCTGGTGGAAACAAAAGCTTCGATCCGgttagcaaatattgttcactatatcaaacagtgttttgaaaacctgcaaatatttttacttgagtactgaaattgttttaactgtctcttgtaaaccaaaaaaaaacag
species | Arabidopsis thaliana |
transcript | AT3G54960.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTTCCCAACAATCCTGTTCTTCCCTGGTGGAAACAAAAGCTTCGATCCG ATCGCTGTGGATGTTGACCGTACAGTAGTGGAACTGTACAAATTCCTGAAGEST: gi|86023357|gb|DR319110.1|DR319110
genomic: GGTTCCCAACAATCCTGTTCTTCCCTGGTGGAAACAAAAGCTTCGATCCGgttagcaaat ... aaaaaaacagATCGCTGTGGATGTTGACCGTACAGTAGTGGAACTGTACAAATTCCTGAAG
EST: CAATCCTGTTCTTCCCTGGTGGAAACAAAAGCTTCGATCCG ATCGCTGTGGATGTTGACCGTACAGTAGTGGAACTGTACAAATTCCTGAAGEST: gi|86023354|gb|DR319107.1|DR319107
genomic: CAATCCTGTTCTTCCCTGGTGGAAACAAAAGCTTCGATCCGgttagcaaat ... aaaaaaacagATCGCTGTGGATGTTGACCGTACAGTAGTGGAACTGTACAAATTCCTGAAG
EST: GTTCCCAACAATCCTGTTCTTCCCTGGGTGGAAACAAAAGCTTCGMTCCG ATCGCTGTGGGATGTTGAEST: gi|86023355|gb|DR319108.1|DR319108
genomic: GTTCCCAACAATCCTGTTCTTCCCTGG-TGGAAACAAAAGCTTCGATCCGgttagcaaat ... aaaaaaacagATCGCTGTGG-ATGTTGA
EST: GGTTCCCAACAATCCTGTTCTTCCCTGGTGGAAACAAAAGCTTCGATCCG ATCGCTGTGGATGTTGACCGTACAGTAGTGGAACTGTACAAATTCCTGAAGEST: gi|124826467|gb|EH911333.1|EH911333
genomic: GGTTCCCAACAATCCTGTTCTTCCCTGGTGGAAACAAAAGCTTCGATCCGgttagcaaat ... aaaaaaacagATCGCTGTGGATGTTGACCGTACAGTAGTGGAACTGTACAAATTCCTGAAG
EST: AGCTTCGATCCG ATCGCTGTGGATGTTGACCGTACAGTAGTGGAACTGTACAAATTCCTGAAG
genomic: AGCTTCGATCCGgttagcaaat ... aaaaaaacagATCGCTGTGGATGTTGACCGTACAGTAGTGGAACTGTACAAATTCCTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGATGGGTTCCCAACAATCCTGTTCTTCCCTGGTGGAAACAAAAGCTTCGATCCGgttagcaaatattgttcactatatcaaacagtgttttgaaaacctgcaaatatttttacttgagtactgaaattgttttaactgtctcttgtaaaccaaaaaaaaacag
- - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - GGTGGA