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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGgttaacaaaaacccttttggattcgttgtctattaagatattgtactttatatgtcagttgacctggttttcctctttccgccattttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G54230.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os02g07070.1 (Oryza sativa), 5'ss of exon 11
GTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGgttaacaaaaacccttttggattcgttgtctattaagatattgtactttatatgtcagttgacctggttttcctctttccgccattttgtag
|||||||||||||  | ||||| |||||  |||||||| ||||||| |||||||||||||| ||||||||| |||| ||||| ||||| |||||    | || |   |           | || || | || |      ||   | || |||||     |      | | | |   || || ||
GTCCAACTCATGTTTTAGTTGTTCGTGGTCTGGATGAAAATGCTGACGAGGAAATGCTTCGATATGAATTTGCCAAGCATGCACCTATAAAGgtgggaagaagcttat-----------gactcttgaaatttgcagtgttccgtttctgttgagagaatga----catgctgttgttgtgcag

upper sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G173777_T01 (Zea mays), 5'ss of exon 10
GTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGgttaacaaaaacccttttggattcgttgtctattaagatattgtactttatatgtcagttgacctggttttcctctttccgccattttgtag
|||||||||||||  | ||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||| | || || || || || |||||   ||| || |   |||   | |  || ||||    |||| | ||  | | || |  ||   |  || ||  |                 
GTCCAACTCATGTTTTAGTTGTTCGTGGCTTGGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCAATAAAGgtgggcaataaactaattg--cttgaggtttattt---tatttttctggacacgttacatg--ttatttctcaccag---------------

upper sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G151614_T03 (Zea mays), 5'ss of exon 11
GTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGgttaacaaaaacccttttg---gattcgttgtctattaagatattg--tactttatatgtcagttgac-ctggttttcctctttccgccattttgtag
|||||||||||||  | ||||| ||||| || |||||| ||||||||||||||||||||||||| |||||| | || || || ||  | |||||    || || |   |||   |||||| | ||| ||    |  ||   || ||| |||| | ||  | |  |                         
GTCCAACTCATGTTTTAGTTGTTCGTGGCTTAGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCATTAAAGgtggggaataaactaattgcttgattcggtttctcttgtttttctggacacattacatgtaatttctcgccag-------------------------

upper sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G35510.1 (Glycine max), 5'ss of exon 9
GTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGgttaa-caaaaacccttttggattcgttgtcta-ttaagatattgtactttatatgtcagttgacctggttt--tcctctttccgccattttgtag-----------------------------
||||||||||||| || ||||| ||||| ||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||| || |||||||    |  |   | |||   | |||  ||| |     || | | | | ||   |  |  |  | || ||  || | |||  |      | ||                              
GTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgttaggttactaaattgttgagctagttaactaatccttttactatgcct-atgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacag

upper sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 9
GTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGgttaacaaaaacccttttggattcgttgtctattaagatattgtactttatatgtcagttgacctggttt--tcctctttccgc--cattttgtag---------------------------
|||||||||||||  ||||||| ||||| ||||||||| |||| |||||||||||||| || ||||| ||||||||||||||||| || ||||||    |  ||   ||  | |   |  |  ||     || | |  |||||   |  || |  | || ||  || | |||  |   || ||| ||                            
GTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgtt--tgattactagttgagctagttaattaatccttttactatg-tttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacag

upper sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 9
GTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGgttaacaaaaacccttttggattcgttgtctattaagatattgtactttatatgtcagttgacctggttttcctctttccgccattttgtag
|||| |  |||||  ||||||| || || ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||   |||       | ||| |   ||||  ||   | | ||  | |||| || |    | |   | ||||| |  |      | |||| ||
GTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaag------tgtggttattttgttaatactggttttcaattttacatctt--ctaa---gtttttcttgctaattttaatttgcag