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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGAgtaagaacaataatatcatcctatttgcagcatcagataccagcagaaaataacttgaactgtcatttcttatatcaaaaccaaaacggttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G53570.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53570.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G386991_T01 (Zea mays), 5'ss of exon 10
GGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGAgtaagaacaataatatcatcctatttgcagcatcagataccagcagaaaataacttgaactgtcatttcttatatcaaa----accaaaacggttcttgcag------------------------------------
|| || || || || ||||| |||||||||||||| |||||||| |||||||| | |||| |||| ||| | |||   |||||| |  ||||||| ||||| |   |  | | |  |  ||| | |   |||| |         |   | | ||       |||     ||     |    | ||   | ||| | ||                                      
GGGGAAGCTCTCTTTCAAACACATGAAAACTTGGAGCATTTGGCTATGATGGAGAAGGTCTTAGGGCCTCTCCCAAAGCATATGATTGTCAGAGCTGAgtatgtgtacaagtcttttgttatcttct-tatcatactttttgtcatttttatttatgtatacatccaagatgaggtatctgatcagttctgttttcgcttatcttattaacctatttattaatgctgtttttacag

upper sequence: AT3G53570.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 10
GGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGAgtaagaacaataatatcatcctatttgcagcatcagataccagcagaaaataacttgaactgtcatttcttatatcaaaaccaaaacggttcttgcag
|||||||| ||||||||||| ||||| |||||||||||| | |||||||||||||| || ||||| ||  |||| || ||||||||| |||| ||||||||||      ||| ||    |  ||   | |  |   |    |     ||||| |   || |   || | || | | | |  |      ||||||||
GGAGAGGCACTTTTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAAAGAGTTCTAGGGCCACTACCTCCCCATATGGTGGTCAGGGCCGAgtaagcttttgaat-tctctttgcttttggaaatatgcattttct----ataaccttt-ctctggattttcatgtaatacctga------tcttgcag

upper sequence: AT3G53570.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA19G35800.1 (Glycine max), 5'ss of exon 8
GGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGAgtaagaacaataatatcatcctatttgcagcatcagataccagcagaaaataacttgaactgtcatttcttatatcaaaaccaaaacggttcttgcag---------------------
||||||||  |||||||||| ||||| |||||||||||| | ||||||||||| || ||  ||| |||  |||| ||  |||||||| |||| | ||||||||      ||| ||    |  ||   | |  |   |    |      |||| |   || |   || | || | | | | ||    | | | |  |                     
GGAGAGGCAGTTTTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAGAGAGTTTTAGAACCACTACCTCCGAATATGGTGGTCAGGGTCGAgtaagcttttgaat-tctctttgcttttggaaatatgcattctctt----taaccttt-ctctggattttcatgtaatacctaatcttgctgtcgtcgagctgaaaagtattttaaaag

upper sequence: AT3G53570.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 10
GGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGAgtaagaacaataatatcatcctatttgcagcatcagataccagcagaaaataacttgaactgtca--tttcttatatcaaaaccaaaacggttcttgcag
|| ||||| ||||||||||| ||||| |||||||||||| | || |||||||| |||||  | |||||| | || |  ||||||||||| ||||| ||||||||   |   | ||      |            || |   ||     |    |  | || ||  ||||||| | |    |  |  |      |||||
GGGGAGGCCCTTTTCCAAACACATGAGAACTTGGAACATCTTGCAATGATGGAGAGGGTGTTGGGACCTCTGCCCCAACATATGGTGCTGAGAGCTGAgtaagatagagtttgtcggttgttccttttttgtgcattctttcactgctt---ctacattggcaattttcttacaccttttctgatcc---ctatgcag