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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACCACAAAACTCAGCTGGAGCTTTTTGTGGATCCTTATAATCGGGGTGGGTGTTGCAGGTCTTTCTGGATATGCAGTCTACAAATACAGAATCAGGgtatacgatgttctttactctggtcttgttatcatattaaaacataggaagattttgcggtctagatagagatgctaagtaacaattgaaattatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G52850.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074500|gb|DR370257.1|DR370257
EST:     TGGGTGTTGCAGGTCTTTCTGGATATGCAGTCTACAAATACAGAATCAGG                         AGTTACATGGATGCGGAAATTAGAGGGATCATGGCACAGTACATGCCATTG
genomic: TGGGTGTTGCAGGTCTTTCTGGATATGCAGTCTACAAATACAGAATCAGGgtatacgatg ... aattatgcagAGTTACATGGATGCGGAAATTAGAGGGATCATGGCACAGTACATGCCATTG
EST: gi|124886263|gb|EH965165.1|EH965165
EST:     TGGGTGTTGCAGGTCTTTCTGGATATGCAGTCTACAAATACAGAATCAGG                         AGTTACATGGATGCGGA
genomic: TGGGTGTTGCAGGTCTTTCTGGATATGCAGTCTACAAATACAGAATCAGGgtatacgatg ... aattatgcagAGTTACATGGATGCGGA