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AGAGCATTAGGACTTCAGTCTCTCCCAGTAGCTTTTGGCACCGAAACTGCAAAATGGATATGCGTTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCGgtatgtactatccactgtttttgtgcagctgtggcttctatttcttttccttgatcttatcaactggatattcaccaatggtaaagcacaaattaatgaa...
species | Arabidopsis thaliana |
transcript | AT3G51820.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTTTCTGTTGCCG GATATCTATTAGCATCTGGGAAACCTTATTATGCGTTGGCGTTGGTTGCTTEST: gi|124749908|gb|EH840038.1|EH840038
genomic: CTTTCTGTTGCCGgtatgtacta ... ttggttgcagGATATCTATTAGCATCTGGGAAACCTTATTATGCGTTGGCGTTGGTTGCTT
EST: GCGTTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCG GATATCTATTAGCATCTGGGAAACCTTATTATGCGTTGGCGTTTGGGTTGCEST: gi|125152304|gb|EL184012.1|EL184012
genomic: GCGTTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCGgtatgtacta ... ttggttgcagGATATCTATTAGCATCTGGGAAACCTTATTATGCGTTGGCGTT-GG-TTGC
EST: AAAATGGATATGCGTTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCG GATATCTATTAGEST: gi|124782975|gb|EH872883.1|EH872883
genomic: AAAATGGATATGCGTTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCGgtatgtacta ... ttggttgcagGATATCTATTAG
EST: AAAATGGATATGCGTTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCG GATATCTATTAGCATCTGGGAAA
genomic: AAAATGGATATGCGTTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCGgtatgtacta ... ttggttgcagGATATCTATTAGCATCTGGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCATTAGGACTTCAGTCTCTCCCAGTAGCTTTTGGCACCGAAACTGCAAAATGGATATGCGTTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCGgtatgtactatccactgtttttgtgcagctgtggcttctatttcttttccttgatcttatcaactggatattcaccaatggtaaagcacaaattaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagcaca