Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCGTATAAACTTACAGAAGGCGTTATTTGAGCTTGAGGAAACTAACCTCAGAAATCGCACTGAACTTCAGCATCTTGATGATGCAATTGCGAAACAGgttagctgctaaagcttctcctaattcagaggtcaatatgttgcattactgtaacctcttctttgttttatag

Basic information

species Arabidopsis thaliana
transcript AT3G49650.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G49650.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv07s0205g00140.t01 (Vitis vinifera), 5'ss of exon 12
AGACCGTATAAACTTACAGAAGGCGTTATTTGAGCTTGAGGAAACTAACCTCAGAAATCGCACTGAACTTCAGCATCTTGATGATGCAATTGCGAAACAGgttagctgctaaagcttctcctaattcagaggtcaatatgttgcattactgtaacctcttctttgttttatag--------------------------------
    || ||||| |||||||| || |||||||| |||||||||||||||||  |||| ||||||||||||||||||||||||||||| ||||| |||||        |  |  |||  |  || |   ||| |  || | |   || |||| ||  | |  |   | ||                                    
---ACGGATAAATTTACAGAAAGCTTTATTTGAACTTGAGGAAACTAACCTTCGAAACCGCACTGAACTTCAGCATCTTGATGATGCTATTGCAAAACAACAGgtacgagagggctagttttactatggagtttcatttata--atgactgcaatttgtgttcattattgccttcacttattctttaatgtgcttggaccatttc