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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGATATTCTTTGGGATGCTTTGTCTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTTGCCACCTTCATCAATCAACTCGgtatgtacccaaatggtagaaatgagtcggttggttagtcggttggttacttcaaatcaagaatacttttcctcatttgtcgcttaaaatgttactttctcgtcatatag

Basic information

species Arabidopsis thaliana
transcript AT3G47730.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G47730.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA04G34140.1 (Glycine max), 5'ss of exon 11
TTTGATATTCTTTGGGATGCTTTGTCTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTTGCCACCTTCATCAATCAACTCGgtatgtacccaaatggtagaaatgagtcggttggttagtcggttggttacttcaaatcaagaatacttttcctcatttgtcgcttaaaatgttactttctcgtcatatag--------------------------
|||||||| || ||||||||  |||||||| ||||||||||| ||||||| ||||  || |||||  || | || || || || || || ||||||   || |||   |||||   ||  |    |    | ||   |   |    |    |||| ||    | ||| |    |    ||  | | |     || | |                            
TTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCCAACTCTTCGCTACTATTAAAGGCCTGTCCCCATCTTCCATAAAATCAgtatgtctgcacatgcctgaaattgttccatacaatcaatgattatgtgtgt---gtgtgcaatatttgaaattattagctattatggatactgcctctcattccttttaattcaagttcttctgtaaaaatgtag

upper sequence: AT3G47730.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 11
TTTGATATTCTTTGGGATGCTTTGTCTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTTGCCACCTTCATCAATCAACTCGgtatgtac---ccaaatggtagaa------atgagtcggttggttagtcggttggttactt-caaatcaagaatacttttcctcatttgtcgcttaaaatgttactttctcgtcatatag--------------------------
|||||||| || ||||||||  |||||||| | ||||||||| ||||||||||||  || |||||  || | ||  | || || || || |||||||    |||     || |        | |      || |||   |  ||   || |     |    |||| ||    | ||| |    | | |||    | | |   || | |                            
TTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCAgtatgtataatccaggccttaaatcgttttgtaaaatcaatgattatgggtgtgtgcacatatgtgtgtgcaatatttgaaattattagctattaagaatacggcctcccattccttttaattcaagttctttggtaaaaatgtag