Sequence
atgc intronic sequence ATGC exonic sequenceATGGGTATGAAAGAAGATAGTGATGAAGTCACAACCAAGACCCGTATATTGTCTCTTGAGCTTCTTCAGgtaaacctagttaatcatcttgtaaatttgtagcaaaggcattacatgatatttagacaaaaaaaaaaaaaaaaaggcattacatgatactgaacttctg...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G43300.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 12
ATGGGTATGAAAGAAGATAGTGATGAAGTCACAACCAAGACCCGTATATTGTCTCTTGAGCTTCTTCAGgtaaacctagttaatcatctt--gtaaatttgtagcaaaggcattacatgatatttagacaaaaaaaaaaaaaaaaaggcattacatgatactgaacttctg
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ATGGGTATGAAGGAAGATAATGATGAAGTTACAACGAAGACGAGGATATTGTCTCTTGAGCTTCTTCAGgttattcagtgatttcagcttcagttactagttagttaataggt-gcaggataatgcattggaatattttattacttgtagtcacgcagaagtaattattt-
upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 11
ATGGGTATGAAAGAAGATAGTGATGAAGTCACAACCAAGACCCGTATATTGTCTCTTGAGCTTCTTCAGgtaaacctagttaatcatcttgtaaatttgtagcaaaggcat---tacatgatatttagacaaaaaaaaaaaaaaaaaggcattacatgatactgaacttctg
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ATGGGTATGAAGGAAGATAATGATGAAGTTACAACGAAGACGAGGATATTGTCGCTTGAGCTTCTTCAGgttatacagtgatttcagcttc--aattactagttagttaataggtgcaggataatgcattggaatgttatattacttgtagtcatgcagaagtaattattt-
upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 12
ATGGGTATGAAAGAAGATAGTGATGAAGTCACAACCAAGACCCGTATATTGTCTCTTGAGCTTCTTCAGgtaaacctagttaatcatcttgtaaatttgtagcaaaggcattacatgatatttagacaaaaaaaaaaaaaaaaaggcattacatgatactgaacttctg----
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ATGGGTATGAAGGAAGATAATGATGAAGTCACAACCAAGACACGGATTTTGTCTCTTGAGCTTCTACAGgtgaatcttatggtt--ttgagtgttcttgtgtgcatgcttctaattgataa--acactcaaaaaatcttaacaaagttatccgtactactagggttcagctgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125003295|gb|EL075564.1|EL075564EST: GTGATGAAGTCACAACCAAGACCCGTATATTGTCTCTTGAGCTTCTTCAG GGTATGTTAGAAGGAG
genomic: GTGATGAAGTCACAACCAAGACCCGTATATTGTCTCTTGAGCTTCTTCAGgtaaacctag ... caatatgcagGGTATGTTAGAAGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGGTATGAAAGAAGATAGTGATGAAGTCACAACCAAGACCCGTATATTGTCTCTTGAGCTTCTTCAGgtaaacctagttaatcatcttgtaaatttgtagcaaaggcattacatgatatttagacaaaaaaaaaaaaaaaaaggcattacatgatactgaacttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa