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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAGgtatgtaatggaaccaaatttctattcttctactgtctttagcaatttccaattgttaccttgtaactgcag

Basic information

species Arabidopsis thaliana
transcript AT3G27470.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27470.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv14s0066g00310.t01 (Vitis vinifera), 5'ss of exon 9
GTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAGgtatg----------------taatggaacca--aatttctattcttctactgtctttagcaatttcc-----aattgttaccttgtaact-gcag
 ||||| ||||| |||||| |||| || || || || |||||||| ||||| ||||||||||||||||| ||                || || | | |   |    ||| | | || |    | |     | ||     ||||||| || ||  ||| ||||
CTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAGgtttggggcattcttttttcatactgtagctattgacacttatccatttattcctatcaagggatacctctgaaattgttgccatgctacttgcag

upper sequence: AT3G27470.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: PP1S70_58V6.1 (Physcomitrella patens), 5'ss of exon 11
GTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAGgtat-gtaatggaaccaaatttctattcttctactgtctttagcaatttc--caattgttaccttgtaactgcag-------------------------
 ||||||||||||||||| ||||||||||| ||    || ||| | ||||| ||||||||||| ||||| | |      ||      || |    |   ||          |||||     |  | |   ||||      |                          
ATTTGTGGAGATTATGGCACCTGTTTTCTCACGATCAGCCTGGAGATGTGTTTGGCATATGATACAGgtgttgccccaaaagttcgattgtgaaatgtcacgcatgaatataatttgagtgaaaggtgtattgttttcagaacccttttgtggaatgtagattttgt

upper sequence: AT3G27470.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: EFJ04271 (Selaginella moellendorffii), 5'ss of exon 6
GTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAGgtatgtaatggaaccaaatttct-attcttctactgtctttagcaatttccaattgtta-ccttgtaactgcag---------------------------------------------
                      ||||| || |||||||| ||||||||||||||||||||||||||   |||   |||  |     |    | |   ||   | ||  |  | | | |||  || | | |||  | | |                                               
---------------------AGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAA-ATGACTTGGTGCATGGCTGGGGACTAGACTTTGGCCTGCAAAAGTGTGCAACGgtgagctttgccagtactttgctttaattattttttcttacattccattcctatgattgagcag

upper sequence: AT3G27470.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: EFJ32148 (Selaginella moellendorffii), 5'ss of exon 7
GTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAGgtatgtaatggaaccaaatttct-attcttctactgtctttagcaatttccaattgtta-ccttgtaactgcag---------------------------------------------
                      ||||| || |||||||| ||||||||||||||||||||||||||   |||   |||  |     |    | |   ||   | ||  |  | | | |||  || | | |||  | | |                                               
---------------------AGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAA-ATGACTTGGTGCATGGCTGGGGACTAGACTTTGGCCTGCAAAAGTGTGCAACGgtgagctttgccagtactttgctttaattatttttgcttacattcctttcctatgattgagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116423910|gb|EG466502.1|EG466502
EST:     TCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAG                         AACGATTTGATTCATGGATGGGGTCTGGACTTTGCCGTTCGGAAATGTGTT
genomic: TCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAGgtatgtaatg ... gtaactgcagAACGATTTGATTCATGGATGGGGTCTGGACTTTGCCGTTCGGAAATGTGTT
EST: gi|116423977|gb|EG466569.1|EG466569
EST:     TCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAG                         AACGATTTGATTCATGGATGGGGTCTGGACTTTGCCGTTCGGAAATGTGTT
genomic: TCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAGgtatgtaatg ... gtaactgcagAACGATTTGATTCATGGATGGGGTCTGGACTTTGCCGTTCGGAAATGTGTT