1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCCTAACATTGCACGAAATGCTTCCTTTGGCATTTGATTATGCGGGACAGAAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGgtaaaaatgcaaacctgagaacccatattcataaatctacttgctgtaaaacataattgaggccttgaaatagtacttgcatcctaggattcaacctagt...
species | Arabidopsis thaliana |
transcript | AT3G20870.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAG TCTTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAAGTTTAEST: gi|116396456|gb|EG439048.1|EG439048
genomic: AAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGgtaaaaatgc ... ttttttgcagTCTTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAAGTTTA
EST: AAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAG TCTTTACTTTCTGGAGCTGAGTTTGCCAGAGACAATGAGCTTGTAAGTTTAEST: gi|116396457|gb|EG439049.1|EG439049
genomic: AAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGgtaaaaatgc ... ttttttgcagTCTTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAAGTTTA
EST: AAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAG TCTTTACTTTCTGGAGCTGAGTTTGCCAGAGACAATGAGCTTGTAAGTTTAEST: gi|116403229|gb|EG445821.1|EG445821
genomic: AAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGgtaaaaatgc ... ttttttgcagTCTTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAAGTTTA
EST: AAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAG TCTTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAAGTTTAEST: gi|86082548|gb|DR378307.1|DR378307
genomic: AAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGgtaaaaatgc ... ttttttgcagTCTTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAAGTTTA
EST: AAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAG TCTTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAAGTTTA
genomic: AAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGgtaaaaatgc ... ttttttgcagTCTTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAAGTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTAACATTGCACGAAATGCTTCCTTTGGCATTTGATTATGCGGGACAGAAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGgtaaaaatgcaaacctgagaacccatattcataaatctacttgctgtaaaacataattgaggccttgaaatagtacttgcatcctaggattcaacctagt
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacata