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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCGGTGCTTACTTCGGTTGAGATGCCTAAATCAGATCCATGGGTAATTATTGCCATTCTCTCCACAGTGCTTGGTTATTGTGCGAAAACATACTTCACgttaagtgcttttctttttgcctttccttgttttcattcttctttgttaagcgaacagcttcttattcgaaaattgtattccttcag

Basic information

species Arabidopsis thaliana
transcript AT3G19340.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 11
TAGCGGTGCTTACTTCGGTTGAGATGCCTAAATCAGATCCATGGGTAATTATTGCCATTCTCTCCACAGTGCTTGGTTATTGTGCGAAAACATACTTCACgttaagtgcttttctttttgcctttccttgtttt-cattcttctttgttaagcga-acagcttcttattcgaaaattgtattccttcag-----------
| || ||  |   |||  |||| ||||||||| | ||||  ||||| ||||||||||| || || ||  || | ||||| ||||| |||||||||||||||| ||||||||||  || |   | | ||| | |  |||   |   |   |    | |  |   | ||| |  ||||  |||||  |              
TGGCTGTAGTCGGTTCACTTGACATGCCTAAAGCTGATCTTTGGGTTATTATTGCCATCCTTTCTACTCTGATCGGTTACTGTGCCAAAACATACTTCACgtaaagtgctttttcttctttttcttcttttatggcatggattcataccataaaacatggaggcatatgcataaatattattcaattgatcaatgtttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164227432|gb|ES070166.1|ES070166
EST:     GTTATTGTGCGAAAACATACTTCAC                         GTTCCAGCAGAACATGGTCTACGTATCAGAACTTGATAACTCAGTCAATGT
genomic: GTTATTGTGCGAAAACATACTTCACgttaagtgct ... attccttcagGTTCCAGCAGAACATGG-CTACGTATCAGAACTTGATAACTCAGTCAATGT
EST: gi|86055111|gb|DR350868.1|DR350868
EST:     ATTGCCATTCTCTCCACAGTGCTTGGTTATTGTGCGAAAACATACTTCAC                         GTTCCAGCAGAACATGGCTACGTATCAGAACTTGATAACTCAGTCAATGTA
genomic: ATTGCCATTCTCTCCACAGTGCTTGGTTATTGTGCGAAAACATACTTCACgttaagtgct ... attccttcagGTTCCAGCAGAACATGGCTACGTATCAGAACTTGATAACTCAGTCAATGTA