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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAATTGAAACAACTTTTTGCCTCATCAAGCCAGATGTATGGTGCTTTAACTTTGGATTTGCACTGCAATCGATTTGGTCCAACTGCTTTGTTTCAGgtacactactaggcccaaagctagaaaatttcacatattcatgttattttcgtattatttaatatactcctctttaccag

Basic information

species Arabidopsis thaliana
transcript AT3G18730.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18730.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os02g54280.1 (Oryza sativa), 5'ss of exon 13
GGAGAAATTGAAACAACTTTTTGCCTCATCAAGCCAGATGTATGGTGCTTTAACTTTGGATTTGCACTGCAATCGATTTGGTCCAACTGCTTTGTTTCAGgtacact-actaggcccaaagct--------agaaaatttcacatattcatgttattttcgtattatttaatatactcctctttaccag--------------------------------------------------------
                                             ||  || ||  ||||||| || || ||||||||||||||||||||||| ||||||||    | ||||  || |||  |        |    |    |||  ||  |  |  ||| | |   |  || | | | | | |||  |                                                         
---------------------------------------------TGGCTTGACACTGGATTTACATTGTAATCGATTTGGTCCAACTGCTTTATTTCAGGTCTTTTTACTATCCCTAAACTTGTTTATCAAAGTGAAACTACAGgttatttctgcttttgaaagctcaaaaaaattgcacattaaaatggactggatcctcttctacaataaaaggaaaacttgactcttggggagagatgttc

upper sequence: AT3G18730.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os02g54170.1 (Oryza sativa), 5'ss of exon 3
GGAGAAATTGAAACAACTTTTTGCCTCATCAAGCCAGATGTATGGTGCTTTAACTTTGGATTTGCACTGCAATCGATTTGGTCCAACTGCTTTGTTTCAGgtacact-actaggcccaaagct--------agaaaatttcacatattcatgttattttcgtattatttaatatactcctctttaccag-----------
 ||||   |  ||||| | ||| | ||||||||||| |  |||||||  || ||  ||||||| || || ||||||||||||||||||||||| ||||||||    | ||||  || |||  |        |    |    |||  ||  |  |  ||| | |   |  || | | |   | |||  |            
TGAGAGGCTTCAACAAATATTTTCTTCATCAAGCCAAACATATGGTGGCTTGACACTGGATTTACATTGTAATCGATTTGGTCCAACTGCTTTATTTCAGgtctttttactatccctaaacttgtttatcaaagtgaaactacaagttatttctgcttttgaaagctcaaaaaaattgaacattaaaatggactggatcc

upper sequence: AT3G18730.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 12
GGAGAAATTGAAACAACTTTTTGCCTCATCAAGCCAGATGTATGGTGCTTTAACTTTGGATTTGCACTGCAATCGATTTGGTCCAACTGCTTTGTTTCAGgt----acactactaggc---------ccaaagctagaaaatttcacatattcatgttattttcgtattat----ttaatatactcctctttaccag---
 || | | |  | ||  | ||||| |||||||| || |  |||||||  || ||| ||||||| || || |||||||| |||||||||||||| ||||||||    ||| | | ||            |||||  | | ||| | | |     ||  |    ||| | | |    || | || ||||  |   |      
TGAAAGACTTCAGCATATATTTGCTTCATCAAGTCACACATATGGTGGCTTGACTCTGGATTTACATTGTAATCGATTGGGTCCAACTGCTTTATTTCAGgtttttacaatcccagaaacttatctatcaaagtgaaataatatgatactcctatcatcccatcggaattttggcttgaaattctccattcagcttctgc

upper sequence: AT3G18730.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA05G32290.1 (Glycine max), 5'ss of exon 13
GGAGAAATTGAAACAACTTTTTGCCTCATCAAGCCAGATGTATGGTGCTTTAACTTTGGATTTGCACTGCAATCGATTTGGTCCAACTGCTTTGTTTCAGgtacactactaggcccaaagctagaaaatttcacatattcatgttattttcgtatta--tttaatatactcctctttaccag------------------
 || ||| |  || |  | ||  |  ||||| | ||    |||||||  |||||| |||||||||| |||||||||||||| ||||| || ||||||||||||   |||||    |||  ||    |  ||  | | ||  | ||    | ||   |  |||   | | |     ||   |                   
CGAAAAACTTCAAAAGGTGTTCACAGCATCAGGACAATCTTATGGTGGGTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACAGCATTGTTTCAGgtatgatactacttgcaacccttttgatctttgcttgtttctcttccccttgttccatgtttctaacattggatcttgttaaatctgatttttaggtatg

upper sequence: AT3G18730.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G15560.1 (Glycine max), 5'ss of exon 13
GGAGAAATTGAAACAACTTTTTGCCTCATCAAGCCAGATGTATGGTGCTTTAACTTTGGATTTGCACTGCAATCGATTTGGTCCAACTGCTTTGTTTCAGgtacactactaggcccaaagctagaaaatttcacatattcatgttattttcgtattatttaatatactcctctttaccag--------------------
 |||||| || || |  | ||  |  ||||| | ||    |||||||  |||||| |||||||||| |||||||||||||| |||||  | ||||||||||||   |||||    |||   |    |  || || | ||  | ||    | || |||| |     |||      |   |                     
CGAGAAACTGCAAAAGGTGTTCACAGCATCAGGACAATCTTATGGTGGCTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACATCATTGTTTCAGgtatgatactacttgcaaccattttgatgtttacttgtttctcttccccttgttttatgtttctaactttgaggtttaaaatgatggttgctctatacct

upper sequence: AT3G18730.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv04s0044g00860.t01 (Vitis vinifera), 5'ss of exon 13
GGAGAAATTGAAACAACTTTTTGCCTCATCAAGCCAGATGTATGGTGCTTTAACTTTGGATTTGCACTGCAATCGATTTGGTCCAACTGCTTTGTTTCAGgtacactactaggcccaaagctagaaaatttcacatattcatgtt---attttcgtattatttaatatactcctc--tttaccag------------------
||||||| |  ||||| | ||    |||||| |||| |  |||||||  ||  ||||||||||||||||||||||||||||||| ||| | ||||| |||||  |  ||          ||||     |||||  |   ||||||   |  ||| | ||  ||  | |  |  ||  || |                      
GGAGAAACTTCAACAAGTATTCATATCATCAGGCCAAAAATATGGTGGCTTGGCTTTGGATTTGCACTGCAATCGATTTGGTCCTACTACCTTGTTCCAGgtttatgacctaatttt--gctactgt-tttcatgtccgcatgttcaaagcttcattttccttgttttttttttcagttaatttaaaggcttcagttttcttc