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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACCTTAAGAAAGCTAGGGATGATGGAGCCAATGTGGTTGGATATTTTGCGTGGTCATTGCTAGATAATTTCGAATGGTTATCAGGATATACTTCAAGgtacttaaaaatttataccaaatgtatgatatgtagaataaatcaaggttataattaatatctgtttttgtttattgtatag

Basic information

species Arabidopsis thaliana
transcript AT3G18080.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076129|gb|DR371886.1|DR371886
EST:     GCGTGGTCATTGCTAGATAATTTCGAATGGTTATCAGGATATACTTCAAG                         GTTTGGGATCGTTTATGTTGATTACAAAACATTGAAGAGGTACCCCAAGAT
genomic: GCGTGGTCATTGCTAGATAATTTCGAATGGTTATCAGGATATACTTCAAGgtacttaaaa ... tattgtatagGTTTGGGATCGTTTATGTTGATTACAAAACATTGAAGAGGTACCCCAAGAT
EST: gi|124778834|gb|EH868777.1|EH868777
EST:     GCGTGGTCATTGCTAGATAATTTCGAATGGTTATCAGGATATACTTCAAG                         GTTTGGGATCGTTTA
genomic: GCGTGGTCATTGCTAGATAATTTCGAATGGTTATCAGGATATACTTCAAGgtacttaaaa ... tattgtatagGTTTGGGATCGTTTA
EST: gi|125294780|gb|EL308865.1|EL308865
EST:     GCGTGGTCATTGCTAGATAATTTCGAATGGTTATCAGGATATACTTCAAG                         GTTTGGGATCGTTTATGTTGATTACAAAACATTGAAGAGGTACCCCAAGA
genomic: GCGTGGTCATTGCTAGATAATTTCGAATGGTTATCAGGATATACTTCAAGgtacttaaaa ... tattgtatagGTTTGGGATCGTTTATGTTGATTACAAAACATTGAAGAGGTACCCCAAGA