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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAGgtacatacactttgtaacattccacttctaaactgattataaccagacttttctctaactgtttttttttttgttttcccaacatatctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G16480.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087838|gb|DR383597.1|DR383597
EST:     ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG                         GAAACCAGTAGACCAATTCTTGAAGACAGTAGACCAACTTACCTTAAAGGA
genomic: ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAGgtacatacac ... atatctgcagGAAACCAGTAGACCAATTCTTGAAGACAGTAGACCAACTTACCTTAAAGGA
EST: gi|47829013|gb|CK118697.1|CK118697
EST:     ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG                         GAAACCAGTAGACCAATTCTTGAAGACAGTAGACCAACTTACCTTAAAGGA
genomic: ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAGgtacatacac ... atatctgcagGAAACCAGTAGACCAATTCTTGAAGACAGTAGACCAACTTACCTTAAAGGA
EST: gi|164105565|gb|ES007188.1|ES007188
EST:     ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG                         GAAACCAGTAGACCAAT
genomic: ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAGgtacatacac ... atatctgcagGAAACCAGTAGACCAAT
EST: gi|164193055|gb|EL991371.1|EL991371
EST:     ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG                         GAAACCAGTAGACCAATTCTTGAAGACAGTAGACCAACTT
genomic: ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAGgtacatacac ... atatctgcagGAAACCAGTAGACCAATTCTTGAAGACAGTAGACCAACTT
EST: gi|163988245|gb|EL997723.1|EL997723
EST:     ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG                         GAAACCAGTAGACCAATTCTTGAAGACAGTAGACCAACTT
genomic: ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAGgtacatacac ... atatctgcagGAAACCAGTAGACCAATTCTTGAAGACAGTAGACCAACTT