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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCATCTCTCTACCTTAGGCTACTGATGGAGAAAGACTTCCCTTGTCTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAgtgagcgttactatccagcacctttgaaactttcctgttgtgttgaattatcattggatcttttggggtaaacactttcggtgcatgtcccacttaaatg...

Basic information

species Arabidopsis thaliana
transcript AT3G15980.5
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 2
CTTTCATCTCTCTACCTTAGGCTACTGATGGAGAAAGACTTCCCTTGTCTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAgtgagcgt-tactatcca---gcacctttgaaactttcctgttgtgttgaattatcattggatcttttggggtaaacactttcggtgcatgtcccacttaaatg
                      | | ||||| ||  |  | |||||  |||| || |||||||| |||||||||||||||||||||||  |    || | || |     |    || | | |||   | ||| | || |    ||   ||     |    |||    |   ||||  |    |  |||  
--------------------ATTGCAGATGGTGAGCGCTTACCCTTAGCTGTGAAGGAGTTGGGAACCTGTGATCTTTATCCACAAgtatgttcatattttctatttaaatgaatgcatcattcgcatagtgatcaagtgatgttt--tccaccagaaccaacttgatgcttgcaaatgagtcccaaa--

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 11
CTTTCATCTCTCTACCTTAGGCTACTGATGGAGAAAGACTTCCCTTGTCTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAgtgagc-----gttactatccagcacctttgaaactttcctgttgtgttgaattatcattggatct-tttggggtaaacactttcggtgcatgtcccacttaaatg
                      | | ||||| ||  |  | ||||||  ||| || |||||||| ||||||||||||||||||||||| ||       || ||||  |  ||   || | | |||   |  || ||  ||   || | | |   |||  |    ||  |  |   || ||  |  ||     
--------------------ATTGCAGATGGTGAGCGCTTACCCTTGGTTGTGAAGGAGTTGGGAACCTGTGATCTTTATCCACAAgtaagttcatatttgctatttaa-acgaatgcatcattcgcatattgatgttttccaatagaaccaacttgatgcttgcaaatgagtcccaagtttctttt-----

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 11
CTTTCATCTCTCTACCTTAGGCTACTGATGGAGAAAGACTTCCCTTGTCTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAgtgagcgttactatccagcacctttgaaactt--tcctgttgtgttgaattatcattggatcttttggggtaaacactttcggtgcatgtcccacttaaatg
                      | ||||||||||||| || || ||| ||||||| |||||||| ||||||||||| |||||||||||||| |  |  ||||     | ||||   |   ||   || | ||| ||||    |  || ||||     |   |   ||    |||||   |   |  ||
--------------------ATTGCTGATGGAGAAAGGCTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAgtgagtg--aacatcccttttccttgatgttaagtcacattcttttgcattacttctctattttttttatcatttatgctcacatcatgtgatagggacttg

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 11
CTTTCATCTCTCTACCTTAGGCTACTGATGGAGAAAGACTTCCCTTGTCTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAgtgagcgttactatccagcacctttgaaactt--tcctgttgtgttgaattatcattggatcttttggggtaaacactttcggtgcatgtccc--acttaaatg
                      | |||||||||||||  | || ||| ||||||| |||||||| ||||||||||| ||||| |||||||| |  |  ||||     |  | | | |   ||   || | ||| ||||    |  || ||||    |  |  ||     |   ||      |||||    
--------------------ATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCTCAAgtgagtg--aacatcctttttccgtaatattaagtcacattcttttgcattacttctctatattttatcatttatgctcatattatgtgatagggacttagg--

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 11
CTTTCATCTCTCTACCTTAGGCTACTGATGGAGAAAGACTTCCCTTGTCTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAgtgagc--gttactatccagcacctttgaaactttcctgttgtgttgaattatcattggatcttttggggtaaacactttcggtgcatgtcccacttaaatg
                    | ||| |||||||||||| | || ||| |||| ||||||||||| |||||||| |||||||| ||||| ||   |||  | || ||| |   ||  |      || ||  || |  |  ||||   | ||   | || ||  | ||      ||||  |  ||  |  
--------------------GTTACAGATGGAGAAAGATTGCCTTTGGCTGTGAAAGAGTTGGGAACCTGTGACCTTTATCCTCAAgtaagttggttcttttctagc-cacatgctatccaagtgatgatttcatgtgccatttt-tgttgaagtgtgaattcatttacctgatgtgacctttccaaa

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
CTTTCATCTCTCTACCTTAGGCTACTGATGGAGAAAGACTTCCCTTGTCTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAgtgagc--gttactatccagcacctttgaaactttcctgttgtgttgaattatcattggatcttttggggtaaacactttcggtgcatgtccc--acttaaatg
                    | |||||||||||||||| | || ||| ||||||| ||||| || |||||||||||||| |||||||||||     |    ||  |||   || ||  ||| || | ||| |  ||| |||||   |   || |  |      | | | | |||||||    ||   |  
--------------------GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattatttaattttttctatggtgctttatt-tcattattttgctttgctttgg---tgtggtttcatgtcctttgctcccacc