Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgtatggaatatatactttcctgtaatacttgtttttcacgtgtaagagagaatattgcatataatgatgcataatactccttccttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G12980.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os06g49130.2 (Oryza sativa), 5'ss of exon 10
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgtatggaatatatactttcctgtaatacttgtttttcacgtgtaagagagaatattgcatataatgatgcataatactccttccttttcag-----------------
| ||||||||||| ||||| ||| |||| ||||||||||| ||||| ||||||||||| || |||||||| || |||||| ||||||||||  |  | |||||  ||  ||| | |  | | ||    ||||| | |  || ||| || |     ||||| |   |     |||| |||   ||||  |||                 
GTTATATATGGGCTTGCCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGgta-agaccatagattggcatctatg--ttgttatccttgt-taatagtgtg-gctgcatttgtggg---gtaatgctctgcccttggcagcaaaaaaatggtttctg

upper sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 5'ss of exon 11
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgtatggaatatatactttcctgtaatacttgtttttcacgtgtaagagagaatattgcatataatgatgcataatactccttccttttcag
| || |||||||| ||||| ||| | || ||||||||||| ||||| || ||||||||||| |||||||| || |||||  | || ||| | ||||| ||||| |   | | |     | | |  ||||   |  |||| | ||   |    | | |  || | ||||   | ||   | || |  | |||
GTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGgtaagacctttgttgacacttctgttactc--tgctcactttta---gctcttctagtttaca-tgatttctgatgtactttacact-cag

upper sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G470556_T01 (Zea mays), 5'ss of exon 10
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgtatggaatatatactttcctgtaatacttgtttttcacgtgtaagagagaatattgcatataatgatgcataatactccttccttttcag
| || |||||||| ||||| ||| | |||||||||||||| || ||||||||||||||||| ||||| || || || ||  |||| |||||  | || ||||| |   ||  |       ||   |  ||| ||||          |||   |    ||| |  | |||  |  ||||| |  |    |||
GTTACATATGGGCTTGCCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGACAAACTGCGTGAGTGgtaagccttaggtgtccaattggtcttgttgctttt----------agatcctccaccatttc-taatgtcttttactcttatccacccag

upper sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgtatggaatatatactttcctgtaatacttgtttttcacgtgtaagagagaatattgcatataatgatgcataatactccttccttttcag
| || |||||||| || || ||| | |||||||||||||| || ||||||||||||||||| ||||| || || || ||  ||||||||||  | || ||||| |   || | ||     ||   |  ||| ||||        |||      |     | ||||| |   | | || |            
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagccttagagacacaattgatcttgttgctttt--------agatcctccaccagttctaatg-tcttttacacccag----------

upper sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgtatggaatatatactttcctgtaatacttgtttttcacgtgtaagag----agaatattgcatata-atgatgcataa--tactccttccttttcag----------------------------
|||| ||||||||||| || ||  | |||||||||||||||||||||||||| ||||| |||||||||||||| |||||  ||||||| || |||||||||||  |  || |  |||     ||| || |  |    | ||| |   |    |   | || ||| || |  ||||  ||  ||||| || ||    |                             
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgta-agtttaaaagcttcaggataa-acataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag

upper sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 13
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgt-------atgg----aatatatactttcctgtaa---------tacttgtttttcacgtgtaa-gagagaatattgcatataatgatgcataatact------ccttccttttcag
||||||| ||||| || || ||  | ||||| |||||||||||||||||||||||||| |||||||||||||| |||||  | ||||| ||| | |||||||       || |    | |||| ||        ||         || || |||| |  ||  || | ||  |  ||   |||    |     |  | |      | |   | |||||
GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaatagcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattaggttatttatctctaacttcagcatttgtaaacatgtttcttcag

upper sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 11
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgt-------atgg----aatatatact---ttcctgtaatacttgttt-ttcacgtgtaagagagaat---attgcatataatgatgcataatactccttccttttcag-------------
||||||| ||||| || || ||  | ||||| |||||||||||||||||||||||||| |||||||||||||| |||||  | ||||| ||| | |||||||       || |    | |||||||    |      || |||||| | || |  |       | |||   |||   | || | ||   |||   ||     || |||              
GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaatagcttcagtatatacaaaatgagaaaaaaacttgtctatttattttccttgtacaatgtgattaggtttattcatctctaac-ttcagcatttgtcaacatgtttctgcag

upper sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgtatggaatatatactttcctgtaatacttgtttttcacgtgtaag-agagaatattgcatataatga-tgcataatactcctt--ccttttcag----------------------------
||||||||||||| || || ||| | ||||||||||| ||||| || |||||||||||||||||||||||||| |||||  |||||||||| || |||||||   || ||  ||   |     ||||   ||||    | | | |  ||     ||| | |  ||| | |   || | |||| |   | ||   |                            
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtg-agagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag