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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAgttagtgaatggtcttggtggtttgattattaaagtcttgatcttctggaattccatgattttagtgactatgtttctttcttcag

Basic information

species Arabidopsis thaliana
transcript AT3G10550.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA10G34510.1 (Glycine max), 5'ss of exon 5
GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAgttagtgaatggtcttg--gtggtttgattattaaagtcttgatcttc---tggaattcca----tgattttagtgactatgtttctttcttcag---------------
 ||||| ||||||| ||||||| | ||||||||||||||||| || ||||| || ||||||||||| ||||||||||| || || |||||||||||||| ||  || |||   ||||  |||||    || |   | | ||| | | |   |  ||||  |    ||| |||| |  ||| || |||   |||                 
AAAGCTGTATATTGTTGATGCACGGCCTAGGAAAAATGCATTGGCTAATGGTGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGgtctgt-aataaacttgaagtggtccagttgt--gatttttgttttccagttataattataaatttgactttattttctaagtatctaaattcttattttatattatcag

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA20G33040.1 (Glycine max), 5'ss of exon 5
GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAgttagtgaatggtcttggtggtttgattattaaagtcttgatcttc---tggaattcca----tgattttagtgactatgtttctttcttcag---------------
 ||||| ||||||| ||||||| | ||||||||||||||||| || ||||| || ||||||||||| ||||||||||| || || ||||||||||| || ||  || |   |  |     ||    || |   | | ||| | | |   |  ||||  |    ||| |||| |  |||  | |||   |||                 
AAAGCTATATATTGTTGATGCACGGCCTAGGAAAAATGCATTGGCTAATGGTGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCCGAGgtctgtaataagcttgaagtgtccagttgt--gatttttgttttccagttataattataaatttgactttattttctaactatctaaattcttattttatattatcag

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv13s0074g00300.t01 (Vitis vinifera), 5'ss of exon 11
GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAgttagtgaatggtcttggtggtttgattattaaagtcttgatcttctggaattccatgatt-ttagtgactatgtttctttcttcag-------------------------------------------
|||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||| || |||||  |||||||||| ||||| ||  ||  ||||| |  |   ||    | |     || | |  |  ||  ||||| |  ||  || ||| | ||||  ||| |                                               
GAAGCTATATATCGCTGATGCAAGACCTAGAAAAAATGCTTTAGCAAACGGAGCAATGGGAGGTGGCTCAGAGTCCTCTTCTCATTATTTTCAGTCTGAGgtctgtctatggtttgagctattctcctctcttgatcataaaatg-tgacattccttacttgctaatga-tctgttcttttatgtgtgatttatttttgataagattttcgttttttggtcattcatcag

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: PP1S71_215V6.1 (Physcomitrella patens), 5'ss of exon 11
GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAgttag---tgaatggtcttggtggtttgatt-attaaagtcttgatcttctggaattcc----atgattttagtgactatgtttctttcttcag
         ||||||||||||  |||||||||| |||||| |||||||||| |  | ||| || || || ||||||||  | |||||| | |||||||| |  ||   || | | |     | || | ||  | |    | |  ||  | |  |  ||     | || | |  ||   ||||| |  |      
---------TATTGCTGATGCTCGACCTAGGAAGAATGCACTAGCCAATGGTGTGACGGGTGGCGGATCGGAATCATCAGCTAATTATCTACAATCTGAGGCAAGATCTgtacgatagattttgtgtcatggaatgccatgtgcattgtataaagctctgctgacgagtattttggaaatgttgcaatag----