1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGACGAAGAGAAGTTAAAGAAACTTGGTGATCTCATGAATGAAAGCCATTACAGCTGCAGTGTCCTATACGAGTGCAGgtgcataaatttaagatccaatgttaagagtgaaactgtttaatgtgaaaaggattgattttgaatttggtgaaatcgtgcag
species | Arabidopsis thaliana |
transcript | AT3G06580.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATCTCATGAATGAAAGCCATTACAGCTGCAGTGTCCTATACGAGTGCAG TTGCCCCGAGCTAGAAGAACTTGTTCAAGTTTGCAAGGAGAATGGAGCACTEST: gi|116456852|gb|EG499444.1|EG499444
genomic: GATCTCATGAATGAAAGCCATTACAGCTGCAGTGTCCTATACGAGTGCAGgtgcataaat ... aatcgtgcagTTGCCCCGAGCTAGAAGAACTTGTTCAAGTTTGCAAGGAGAATGGAGCACT
EST: GATTTCATGAATGAAAGCCATTACAGCTGCAGTGTCCTATACGAGTGCAG TTGCCCCGAGCTAGAAGAACTTGTTCAAGTTTGCAAGGAGAATGGAGCACT
genomic: GATCTCATGAATGAAAGCCATTACAGCTGCAGTGTCCTATACGAGTGCAGgtgcataaat ... aatcgtgcagTTGCCCCGAGCTAGAAGAACTTGTTCAAGTTTGCAAGGAGAATGGAGCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACGAAGAGAAGTTAAAGAAACTTGGTGATCTCATGAATGAAAGCCATTACAGCTGCAGTGTCCTATACGAGTGCAGgtgcataaatttaagatccaatgttaagagtgaaactgtttaatgtgaaaaggattgattttgaatttggtgaaatcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG