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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGATATTTTTGGTACGAGTATATATACAAGATGGACAAGTTAACTTACAACAAATATCATCCTTACACCTCTTGGATTCCAATAACgtagtccactttacctgcaaatctctatacaaccactcttctaagaaccagtccttacttgtgtacctcgttttgcttttctttcag

Basic information

species Arabidopsis thaliana
transcript AT3G06550.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06550.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA17G04070.1 (Glycine max), 5'ss of exon 11
GTGGGATATTTTTGGTACGAGTATATATACAAGATGGACAAGTTAACTTACAACAAATATCATCCTTACACCTCTTGGATTCCAATAACgta-gtccactttacctgcaaatctctat------acaaccactcttctaagaa------ccagtccttacttgt--gtacctcgttttgcttttctttcag--
||||| ||||| ||||  ||| ||||||||||| |||||||| | || ||||| ||||| |||||||| ||||| |||||||| |||||||| |||||  || |||  |  | | | |      |  |     ||  | |||        ||   |||  | ||   || |  |      |||| ||| |   
GTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGGTCACATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACgtatgtccatgtttccttaatcttttttttttgggaggaggggcctgatgagagagatattcaagactttttagttattaacatgacacatttttatttgacag

upper sequence: AT3G06550.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G36550.1 (Glycine max), 5'ss of exon 11
GTGGGATATTTTTGGTACGAGTATATATACAAGATGGACAAGTTAACTTACAACAAATATCATCCTTACACCTCTTGGATTCCAATAACgta-gtccactttacctgcaaatctctat----acaaccactcttctaagaaccagtccttacttgtg-----tacctcgttttgcttttctttcag--
||||| ||||| ||||  ||| ||||||||||| |||||||| |  | ||||| ||||| |||||||| ||||| |||||||| |||||||| ||||| ||| |||  | || |   |    |  |     ||  | |||   | |    |||| |      || |  |      |||| ||| |   
GTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACgtatgtccatttttccttaatattttatttgggaggaggggcctgatgagagatattaaagacttttagttattaacgtgacacatttttatttgacag

upper sequence: AT3G06550.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 11
GTGGGATATTTTTGGTACGAGTATATATACAAGATGGACAAGTTAACTTACAACAAATATCATCCTTACACCTCTTGGATTCCAATAACgtagtccactttacctgcaaatctctatacaaccactcttctaagaaccagtccttacttgtgtacctcgttttgcttttctttcag
||||||||| | |||| |||| ||||||||||| |||||||| | || ||||| || || ||||| || ||||| ||||||||||||| ||| | ||  ||  |   ||||  ||      ||  | ||         |   |||     |||   |  |     |||| ||||||
GTGGGATATCTGTGGTTCGAGCATATATACAAGCTGGACAAGCTTACATACAATAAGTACCATCCATATACCTCATGGATTCCAATAAGgta-tgcatattgtcctgaaatgcct---tggccttttttaattattttaaagcttttgcttgttttttatgcaatttttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124823291|gb|EH908157.1|EH908157
EST:     AAGTTAACTTACAACAAATATCATCCTTACACCTCTTGGATTCCAATAAC                         TGTTTATATCTGTCTCCGG
genomic: AAGTTAACTTACAACAAATATCATCCTTACACCTCTTGGATTCCAATAACgtagtccact ... tttctttcagTGTTTATATCTGTCTCCGG