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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAGgtaaaacctcactcaaatctttcccacacaaacaaagtaacacacaaggaaagcctgtttccactttctagatcttgactttgtctatggaatgtttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G05910.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05910.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA03G38650.1 (Glycine max), 5'ss of exon 11
TAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAGgtaaaacctcactcaaatctttcccacacaaacaaagtaacacac-aaggaaagcctgtttccactttctagatcttgactttgtctatggaatgtttgtag----
 |  |||||||| ||||| || |||||||| ||| ||||||||||||| ||||| || ||||| |||||||| ||  ||||||||||||||||||| ||||| |  ||| || |       |    ||    ||  || |   |   |    ||| ||||| |    | || ||  |  |  |     || || |||   ||    
AAAGCAGAATGGCTTGTTTATTAATTCTTGTTTTTCTCACTGCCAAACTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTGTTATCAGGAACAAGgtgag-cctgacactttagactaatgcaatttcagtgtgatctattgatatgagcttgttttcctaatgtaaattgtagccat-----tgaaaagttcaaagaaaa

upper sequence: AT3G05910.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA19G41240.1 (Glycine max), 5'ss of exon 11
TAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAGgtaaaacctcactcaaatctttcccacacaaacaaagtaacacac-aaggaaagcctgtttccactttctagatcttgactttgtctatggaatgtttgtag----
 |  |||||||| ||||| || |||||||| ||| ||||||||||||| ||||| || ||||| |||||||| ||  ||||||||||||| ||||| ||||| |  ||| || |      ||    ||    ||   | |||     |    ||| ||||| |    | || ||  |  |  |     || || |||   ||    
AAAGCAGAATGGCTTGTTTATTAATTCTTGTTTTTCTCACTGCCAAACTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTGTTATTAGGAACAAGgtgag-cctgacactgtagattaatgcaatttcagtttgacatgttgacatgagcttgttttcctaatgtaaattgtagccat-----tgaaaagttcaaagaaaa

upper sequence: AT3G05910.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA10G28230.1 (Glycine max), 5'ss of exon 11
TAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAGgtaaaacctcactcaaatctttcccacacaaacaaagtaacacacaaggaaagcctgtttcc-----actttctagatcttgactttgtctatggaatgtttgtag
  | ||||||||||||||||| ||||| || ||||||||||||||| | ||||| || ||||| |||||||| ||  | |||||||| ||  |||| |||||    | |   |||  ||| |   |  ||     ||| |   | |  | |     || |       | ||| || | || || |  |  |||  | |  ||    
ACGTCAGAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAGGCAGGATACATGGTTTGCTGACAACTCTCCTGTCATTGGGAACAAGgtgggtctttcatcatgtctcta--atgcagttttagttaagaatatcgcatcttggtatgtggaggagtttgtata-ctagattgagcttata-attacttaa--

upper sequence: AT3G05910.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA20G22210.1 (Glycine max), 5'ss of exon 11
TAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAGgtaaaacctcactcaaatctttcccacacaaacaaagtaacacacaaggaaagcctgtttccact----ttctagatcttgactttgtctatggaatgtttgtag
    || |||||||||||||| ||||| || ||||||||||||||| | ||||| || ||||| |||||||| ||  |||||||||| ||  |||| |||||     |    |||  ||| |   |  ||     |||     | |  | |     || | |       ||  |   || || |  |  ||  ||   | ||   
ACCTCAAAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTGTCATTGGGAACAAGgtgggtgccttatcatgtctctg--atgcagttttagttgagaatattgcatcttggtatgcggaggagtttcaatactagattgagcttaatgatgatatg---

upper sequence: AT3G05910.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv14s0060g00230.t01 (Vitis vinifera), 5'ss of exon 11
TAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAGgtaaaacctcactcaaatctttcccacacaaacaaagtaacacacaaggaaagcctgtttccactttctagatcttgactttgtctatgga-atgtttgtag----
|| ||| || || || ||||| ||||| || |||||||||||||| || ||||| || ||||| |||||||| ||| |||||||  |||| |  || ||||||   ||| | |  |  ||   | | |   |     | |     |   ||| | | || | | |||||  || ||   |  | || || | ||| || |||    
TAAACAAAACGGGTTATTCATAAATTCATGTTTTGCTCACTGCCAGACAGAGAGGCAGGATACGTGGTTTGCTGATAATTCTCCCATTATTAAAAACAAGgtatg-ccttatttga--ctaaacaaaatggattggattat---tatccaaatcttcttacaaatttctttatatttgttgagcctttgcatatgcttatagagac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164118527|gb|ES094615.1|ES094615
EST:     ATTCTCCTGTTATCAGG-AAAAG                         GCGGTGGCAATAGCTGTAGGAGATTGGTATTTCGATAGAGCGGAA
genomic: ATTCTCCTGTTATCAGGAAAAAGgtaaaacctc ... atgtttgtagGCGGTGGCAATAGCTGTAGGAGATTGGTATTTCGATAGAGCGGAA
EST: gi|86077705|gb|DR373462.1|DR373462
EST:     AGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAG                         GCGGTGGCAATAGCTGTAGGAGATTGGTATTTCGATAGAGCGGAAGTGAAG
genomic: AGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAGgtaaaacctc ... atgtttgtagGCGGTGGCAATAGCTGTAGGAGATTGGTATTTCGATAGAGCGGAAGTGAAG