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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagttttaaactactcatgtattggtttctacaattgatgagtttccatgatgatcagttttaatcgggcgttttgaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G04820.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04820.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv14s0030g01850.t01 (Vitis vinifera), 5'ss of exon 6
GCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagttttaaactac------tcatgtattggtttctacaattgatgagtttccatgatgatcagttttaatcgggcgttttgaaacag-----------
              | || ||||||||||| || |||| || ||| ||||| ||||| ||||||||| | || ||  | || |||||||||||||| ||||||||| |  |||||       |  || ||   ||| | |  ||  ||| || |    | | | | |  |     |   | ||| ||              
------------GAAGGCACGGGAATATTATAAGGAAAGTGATGATATTGAAGGGACCCTAAGGCAATTCCCTCGTCATCTGGTTGCTGAAAGAGCTATAgtaagtctccaactatgggtaatggtgcataatttttttcccttt-tgaattccttctaaggttaatgcttccttgtattgttggaaggtaaatttatagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116457912|gb|EG500504.1|EG500504
EST:     ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATA                         CTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
genomic: ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagtttta ... tttgaaacagCTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
EST: gi|116457905|gb|EG500497.1|EG500497
EST:     ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATA                         CTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
genomic: ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagtttta ... tttgaaacagCTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
EST: gi|116457910|gb|EG500502.1|EG500502
EST:     ACGGGACTCTAAGGCAACTACCGCAATACCTCGTTGCTGAAAGAGCCATA                         CTGCAGAGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
genomic: ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagtttta ... tttgaaacagCTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
EST: gi|116457913|gb|EG500505.1|EG500505
EST:     ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATA                         CTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
genomic: ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagtttta ... tttgaaacagCTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
EST: gi|116457903|gb|EG500495.1|EG500495
EST:     ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATA                         CTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
genomic: ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagtttta ... tttgaaacagCTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
EST: gi|116457908|gb|EG500500.1|EG500500
EST:     ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATA                         CTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
genomic: ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagtttta ... tttgaaacagCTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
EST: gi|116457916|gb|EG500508.1|EG500508
EST:     ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATA                         CTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
genomic: ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagtttta ... tttgaaacagCTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
EST: gi|116457919|gb|EG500511.1|EG500511
EST:     ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATA                         CTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
genomic: ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagtttta ... tttgaaacagCTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
EST: gi|116457901|gb|EG500493.1|EG500493
EST:     ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATA                         CTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC
genomic: ACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATAgtaagtttta ... tttgaaacagCTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGC