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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAGGAGCCCAACTATGCCAAGCTTATCTCGATTTTTGATACTCTTATCGAGCCATGTGCTATATCTAGACCAATTAGAATTGATGGGGCTCTAAAGgtgctgactttggttcatatgtttatttttcactatttataaataatacaataagtactgatattttacttttgcatcaatag

Basic information

species Arabidopsis thaliana
transcript AT3G03940.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G164265_T02 (Zea mays), 5'ss of exon 11
---TGATGAGGAGCCCAACTATGCCAAGCTTATCTCGATTTTTGATACTCTTATCGAGCCATGTGCTATATCTAGACCAATTAGAATTGATGGGGCTCTAAAGgt----gctgactttggttcatatgtttatttttcactatttataaataatacaataagtactgatattttacttttgcatcaatag
   |||||| ||||| || ||||||||||||||||| |||||||||  | | || ||  ||  |||    || |||||| | |||||||||||||| || |||||     || ||| |       || | ||||| |   | ||  |   ||     ||  || |   || | ||               
ATTTGATGAAGAGCCAAATTATGCCAAGCTTATCTCTATTTTTGATGGTTTGATTGAAGCACCTGC---GTCGAGACCAGTCAGAATTGATGGGGCCCTCAAGgtctgtactaactattccctccatatatatttatatttcttcgtccttatctttatttgttcccgtactatag--------------

upper sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 11
TGATGAGGAGCCCAACTATGCCAAGCTTATCTCGATTTTTGATACTCTTATCGAGCCATGTGCTATATCTAGACCAATTAGAATTGATGGGGCTCTAAAGgt------gctgactttggttcat-atgtttatttttca-ctattta--taaataatacaataagtactgatatt-tta---cttttgcatcaatag
||||||||||||||| |||||||||||||| ||  ||||||| |   | || || |||||  ||   |  ||||| |||||||| ||||| ||| |||||||      | ||  |||  || |  ||||| |  | | | ||||||   |  || | |   |   || | | | |  ||   |||||  |  || ||
TGATGAGGAGCCCAATTATGCCAAGCTTATATCACTTTTTGAAAGCTTGATTGAACCATGCACTCCGTTGAGACCTATTAGAATAGATGGAGCTTTAAAGgttgctatggtgtttttattttaggatgttaaggtgttatctattttgtttgattacattgtgtataataagaatgctaaatcttttttacaaacag