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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCCTATCCAGTTTTTCCTGGAGGAGCAATAATTGGATGTTCAGCTGGTTTTCTCAATGTACCCAAGATTAAGGGAACACACACTGCAATGAAATCAGgtcacaatgtttttgataggaaacgttttctttttccattgtcccttcaatgaattctcatcttaattacatctatatcttacag

Basic information

species Arabidopsis thaliana
transcript AT2G43400.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43400.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G032222_T01 (Zea mays), 5'ss of exon 11
ATTCCCTATCCAGTTTTTCCTGGAGGAGCAATAATTGGATGTTCAGCTGGTTTTCTCAATGTACCCAAGATTAAGGGAACACACACTGCAATGAAATCAGgtcacaatgtttttgataggaaacgtt-ttctttttccattgtcccttcaatgaattctcatcttaattacatctatatcttacag--------------------
|| || |||||| |||| |||||||| ||||| |||||||| || || || ||||| ||||| ||||| || || ||||| || || || ||||||||||||    || ||| |  |   ||| |||  | | |||  | | || ||  |     |    | |||||||  | |  |  ||||                       
ATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAATCAGgt----atctttctactc--aaatgttactttgtttgtaatttcactaaagcttctggataacttaattgtaccatttgcttaacttggcttcatggttgatgtta

upper sequence: AT2G43400.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA15G03360.1 (Glycine max), 5'ss of exon 11
ATTCCCTATCCAGTTTTTCCTGGAGGAGCAATAATTGGATGTTCAGCTGGTTTTCTCAATGTACCCAAGATTAAGGGAACACACACTGCAATGAAATCAGgtcacaatgtttttgataggaaacgttttctttttccattgtcccttcaatgaattctcatcttaattacatctatatcttacag-----------------
|| || |||||||||||||||||||||||||| ||||||||||||||||| ||  | ||||| || ||||| |||||||| ||||| |||||||||||||||       |  |  ||   |   | ||  |||||| |   |      |||   |  |  | || | |  |  || || ||  ||                 
ATCCCATATCCAGTTTTTCCTGGAGGAGCAATTATTGGATGTTCAGCTGGCTTCATGAATGTGCCAAAGATAAAGGGAACTCACACGGCAATGAAATCAGgtaggggcttagtcaattctactggattgatttttc-agcatattgctaattggtatttttttttactgaagtta-attttgtagttttgttgaaaagaatt

upper sequence: AT2G43400.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv05s0102g01110.t01 (Vitis vinifera), 5'ss of exon 11
ATTCCCTATCCAGTTTTTCCTGGAGGAGCAATAATTGGATGTTCAGCTGGTTTTCTCAATGTACCCAAGATTAAGGGAACACACACTGCAATGAAATCAGgtcacaat------gtttttgataggaaacgttttctttttccattg-tcccttcaatgaattctcatcttaatt--acatctatatcttacag------
||||| ||||||||||| || || |||||||| |||||||| |||||||| || || || || || ||||| ||||||||||| |||||||||||||||||| | |||      | | |   | |   |  | ||      | |    ||      ||||  | |    |||||   | || |  ||      |      
ATTCCATATCCAGTTTTCCCAGGTGGAGCAATCATTGGATGCTCAGCTGGCTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAGgtaataatcgcagagatctcattggctgatatatttggaaacaacaaatctggatgatgacattttgaattaatacaaaattttcattacttggcaaatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116411359|gb|EG453951.1|EG453951
EST:     TTTTCTCAATGTACCCAAGATTAAGGGAACACACACTGCAATGAAATCAG                         GAATGTTAGCAGCAGAGGCTGCATTTGGTGCACTTCATGAAGGCTTAAACA
genomic: TTTTCTCAATGTACCCAAGATTAAGGGAACACACACTGCAATGAAATCAGgtcacaatgt ... tatcttacagGAATGTTAGCAGCAGAGGCTGCATTTGGTGCACTTCATGAAGGCTTAAACA
EST: gi|116411360|gb|EG453952.1|EG453952
EST:     TTTTCTCAATGTACCCAAGATTAAGGGAACACACACTGCAATGAAATCAG                         GAATGTTAGCAGCAGAGGCTGCATTTGGTGCACTTCATGAAGGCTTAAACA
genomic: TTTTCTCAATGTACCCAAGATTAAGGGAACACACACTGCAATGAAATCAGgtcacaatgt ... tatcttacagGAATGTTAGCAGCAGAGGCTGCATTTGGTGCACTTCATGAAGGCTTAAACA