1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTACGTGTTTGGGATCACACATGTTCCTAGACTTGAAGATTGGCCGGTTATGCCCGTCGAACATATTGGTTTCACACTAATGgtaagttaaatctttgactgtaactttcaatggaaaaaaaaccttacaaaggattggttaaaaaatgttttgggttttgggtaaaatacag
species | Arabidopsis thaliana |
transcript | AT2G42490.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGATTGGCCGGTTATGCCCGTCGAACATATTGGTTTCACACTAATG CCACATGGATTTTTCAACTGCTCACCGGCEST: gi|124794438|gb|EH884117.1|EH884117
genomic: TTGAAGATTGGCCGGTTATGCCCGTCGAACATATTGGTTTCACACTAATGgtaagttaaa ... taaaatacagCCACATGGATTTTTCAACTGCTCACCGGC
EST: TTGAAGATTGGCCGGTTATGCCCGTCGAACATATTGGTTTCACACTAATG CCACATGGATTTTTCAACTGCT
genomic: TTGAAGATTGGCCGGTTATGCCCGTCGAACATATTGGTTTCACACTAATGgtaagttaaa ... taaaatacagCCACATGGATTTTTCAACTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGTGTTTGGGATCACACATGTTCCTAGACTTGAAGATTGGCCGGTTATGCCCGTCGAACATATTGGTTTCACACTAATGgtaagttaaatctttgactgtaactttcaatggaaaaaaaaccttacaaaggattggttaaaaaatgttttgggttttgggtaaaatacag
- - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - TGAAGA