1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
ATAGCTTCACTTGCCATCCGTAGTGGAAATGGTCTTCTGCTGAAGGGTGGAAAGGAGGCCCGGCGATCAAATGCTATCTTACACAAGgtaccattgcctcagatttcatatcattatttgcctcaaaatttatcactacagctcttttaagttcatggtaaatttctag
species | Arabidopsis thaliana |
transcript | AT2G39800.4 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGCTGAAGGGTGGAAAGGAGGCCCGGCGATCAAATGCTATCTTACACAAG GTGATCACTGATGCAATTCCAGAGACTGTTGGGGGTAAACTCATTGGACTTEST: gi|164091186|gb|EL992417.1|EL992417
genomic: TGCTGAAGGGTGGAAAGGAGGCCCGGCGATCAAATGCTATCTTACACAAGgtaccattgc ... aaatttctagGTGATCACTGATGCAATTCCAGAGACTGTTGGGGGTAAACTCATTGGACTT
EST: TGCTGAAGGGTGGAAAGGAGGCCCGGCGATCAAATGCTATCTTACACAAG GTGATCACTGATGCAATEST: gi|47832219|gb|CK121903.1|CK121903
genomic: TGCTGAAGGGTGGAAAGGAGGCCCGGCGATCAAATGCTATCTTACACAAGgtaccattgc ... aaatttctagGTGATCACTGATGCAAT
EST: TGCTGAAGGGTGGAAAGGAGGCCCGGCGATCAAATGCTATCTTACACAAG GTGATCACTGATGCAATTCCAGAGACTGTTGGGGGTAAACTCATTGGACTTEST: gi|86060515|gb|DR356272.1|DR356272
genomic: TGCTGAAGGGTGGAAAGGAGGCCCGGCGATCAAATGCTATCTTACACAAGgtaccattgc ... aaatttctagGTGATCACTGATGCAATTCCAGAGACTGTTGGGGGTAAACTCATTGGACTT
EST: AAGGAGGCCCGGCGATCAAATGCTATCTTACACAAG GTGATCACTGATGCAATTCCAGAGACTGTTGGGGGTAAACTCATTGGACTT
genomic: AAGGAGGCCCGGCGATCAAATGCTATCTTACACAAGgtaccattgc ... aaatttctagGTGATCACTGATGCAATTCCAGAGACTGTTGGGGGTAAACTCATTGGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGCTTCACTTGCCATCCGTAGTGGAAATGGTCTTCTGCTGAAGGGTGGAAAGGAGGCCCGGCGATCAAATGCTATCTTACACAAGgtaccattgcctcagatttcatatcattatttgcctcaaaatttatcactacagctcttttaagttcatggtaaatttctag
- - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG