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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGGCTGGATCTCAACCGGTGAATGCTCTAGCGTTTGTTTTGGATGGGCTCTATTATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATGgtcccttttccttcttcatcaattggtcgtttgattctcccttttcttcacctggaaaaagttgattatttctcattttggaacag

Basic information

species Arabidopsis thaliana
transcript AT2G38330.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38330.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os12g01580.1 (Oryza sativa), 5'ss of exon 10
TTTGTGGCTGGATCTCAACCGGTGAATGCTCTAGCGTTTGTTTTGGATGGGCTCTATTATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATGgtcccttttccttcttcatcaattggtcgtttgattctcccttttcttcacctggaaaaagttgattatttc-----tcattttggaacag
|||||  |||  ||||||||  | |||||| | ||||||||  ||||||||||||| |||||||| |||||||| |  || |  || || ||||  || |   || ||  |      ||    | ||  ||  |   |    |  | ||| |  |   | || |  |      |  | |||   |||
TTTGTCACTGTTTCTCAACCAATAAATGCTGTTGCGTTTGTGATGGATGGGCTCTACTATGGTGTTTCTGACTTTGCTTTCGTGGCATACTCTACAgttcagatttctattcttatcatgtcccattgtatagtttatcagttatagctgcagcatcctaatcacattagtatttttcttgtttcag

upper sequence: AT2G38330.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G19210.1 (Glycine max), 5'ss of exon 14
TTTGTGGCTGGATCTCAACCGGTGAATGCTCTAGCGTTTGTTTTGGATGGGCTCTATTATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATGgtcccttttccttcttcatcaattggtcgtttgattctcc---cttttcttcacctggaaaaagttgattatttctcattttggaacag-------------------
||||| |||||||||||||| ||||||||| | || |||||| | |||||| | |||||||| || || ||||| |||| ||| ||||| || |||||   ||  |     |  |  |  | | |||  |   |||    | || ||| |    ||    ||  ||  | ||| ||||                          
TTTGTTGCTGGATCTCAACCAGTGAATGCTTTGGCATTTGTTATTGATGGGATTTATTATGGGGTATCAGACTTTGGATATGCTGCTTACTCGATGgtaagttc-ctacaatggttgaaagatagttaaacattccatattatttttccctcttaactcattatttcgtgctcttttttttcttttggcttttgttatgggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19742531|gb|AU227884.1|AU227884
EST:     AT-GGCTCTATTATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATG                         GTGATTGTCGGATTCATATCTTCCTTGTTCATGCTTGTGGCTGCACCAACC
genomic: ATGGGCTCTATTATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATGgtcccttttc ... tttggaacagGTGATTGTCGGATTCATATCTTCCTTGTTCATGCTTGTGGCTGCACCAACG