Sequence
atgc intronic sequence ATGC exonic sequenceGTCATCACAACAGATGCACTAGTTGAAAGTGATATCTGGAGAAAGATGGTAAAGGTTGCAGTTAACCGAAGTTTCAACCAGATCACTgtatgttacacaatttcaattttcaaacattgttgtaattaaattatttcatttccagtctcattaaataaaagcatggtcttatag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G37500.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G37500.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA13G19450.2 (Glycine max), 5'ss of exon 11
GTCATCACAACAGATGCACTAGTTGAAAGTGATATCTGGAGAAAGATGGTAAAGGTTGCAGTTAACCGAAGTTTCAACCAGATCACTgtatgttacacaatttcaattttcaaacattgt---tgtaattaa-attatttcatttccagtctcattaaata-aaagcatggtcttatag---------
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GTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTGCAGGTTGCTGTAAACCGAAGTTTCAACCAGATAACTgtatgtgtttttcatgctttttctggatattatgaattcagttagtgatatattggtgcta-cattatcaattataaaataattcttttcagcattttccc
upper sequence: AT2G37500.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 10
GTCATCACAACAGATGCACTAGTTGAAAGTGATATCTGGAGAAAGATGGTAAAGGTTGCAGTTAACCGAAGTTTCAACCAGATCACTgtatgttacacaatttcaattttcaaacattgtt------gtaattaaattatttcatttccagtctcattaaataaaagcatggtct-tatag-------
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GTAATAACAACTGATGCCTGGGTAACCAGTGATGTTTGGAGAAAGATGGTGCAGGTTGCTGTAAATCGAAGTTTCAACCAGATAACTgtatgtgtttttcactccttttctggatattatgaattcagttagtgatatattggcgctacattatcattta-taaaataattttcagtattttccctat
upper sequence: AT2G37500.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 11
GTCATCACAACAGATGCACTAGTTGAAAGTGATATCTGGAGAAAGATGGTAAAGGTTGCAGTTAACCGAAGTTTCAACCAGATCACTgtatgttacacaatt---tcaatttt--caaacattgttg---taattaaattatttcatttccagt---ctcattaaataaaagcatggtcttatag--
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GTCGTAACAACTGATGCCTTGGTTGCAAGTGATGTTTGGAGAAAGATGGTGCAGATTGCTGTAAACCGGAGTTTCAACCAAATTACTgtatgtaatattcttgtataagttttatcaaatttgactggactagctggtcagactggtgacgggtaacctggtcagtcaactagtcaagttcaccatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
Nothing found
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATCACAACAGATGCACTAGTTGAAAGTGATATCTGGAGAAAGATGGTAAAGGTTGCAGTTAACCGAAGTTTCAACCAGATCACTgtatgttacacaatttcaattttcaaacattgttgtaattaaattatttcatttccagtctcattaaataaaagcatggtcttatag
- - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA