Sequence
atgc intronic sequence ATGC exonic sequenceTATTCTATGCCTGCTCACTGGATCCTGAAAATTGTGGTGTGAAATTTGCTAGTAAGCTAGTGGAGATTTTTCTCTCCAGCAACAAGCATGTAGCTACTAGgcaagcatcccttcggtttaaattttctcgttcgctgcatgatatgttctgtcattgttctaatcacaaacttggttgtgcttttgtctctcccccttaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G34750.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G34750.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os06g47350.2 (Oryza sativa), 5'ss of exon 11
TATTCTATGCCTGCTCACTGGATCCTGAAAATTGTGGTGTGAAATTTGCTAGTAAGCTAGTGGAGATTTTTCTCTCCAGCAACAAGCATGTAGCTACTAGgcaagcatcccttcggtttaaattttctcgttcgc-tgcatgatatgttctgtcattgttct----aatcacaaacttggttgtgcttttgtctctcccccttaacag
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TGTTTTATGCCTGCTCACTGGATCCTGAAATCTGTGGCCTTGAATTCGCTCTCTTCCTCTCTGATATCTTTATTAAAAAGGAAGAGGATTCAATTTCTAGgta--tttttttcccatatcatgcatacagctaacgtgcataccttgtatt-tctttgtcttgtgaacttgtgatcatagctggcattgggtgctgagtgatt-----
upper sequence: AT2G34750.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv04s0044g01700.t01 (Vitis vinifera), 5'ss of exon 10
TATTCTATGCCTGCTCACTGGATCCTGAAAATTGTGGTGTGAAATTTGCTAGTAAGCTAGTGGAGATTTTTCTCTCCAGCAACAAGCATGTAGCTACTAGgcaagcatcccttcggtttaaattttctcgttcgctgcatgatatgttctgtcattgttctaatcacaaacttgg--ttgtgcttttgtctctcccccttaacag-
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TGTTCTATGCCTGTGCTCTCGACCCTGAAAATTGTGGTGTGAGATTTGCTAGGGTGCTTGCAGATTTTTTTGTTTGCAGTACTT----TTCCACCGCTTAACAGgtaatc--ttgatttgaattttagtgatggctctttcccttgtgatttggacaacgtgatcagattcttggccttgtaaaatgggggggggggggaagaaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124948550|gb|EL024289.1|EL024289EST: AGTAAGCTAGTGGAGATTTTTCTCTCCAGCAACAAGCATGTAGCTACTAG AATGAGTGCGGTGGCTTATCTTGCTAGCTTCTTGG
genomic: AGTAAGCTAGTGGAGATTTTTCTCTCCAGCAACAAGCATGTAGCTACTAGgcaagcatcc ... cccttaacagAATGAGTGCGGTGGCTTATCTTGCTAGCTTCTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTCTATGCCTGCTCACTGGATCCTGAAAATTGTGGTGTGAAATTTGCTAGTAAGCTAGTGGAGATTTTTCTCTCCAGCAACAAGCATGTAGCTACTAGgcaagcatcccttcggtttaaattttctcgttcgctgcatgatatgttctgtcattgttctaatcacaaacttggttgtgcttttgtctctcccccttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT