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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCATCCCTACACATCGTGGATTCCAATAACgttagtatcaaatcccgttttctttcaccccaaacattaaactttgagatgtcttactctctaaattctgactttagctttgattattttgtcttag

Basic information

species Arabidopsis thaliana
transcript AT2G34410.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34410.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 11
GTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCATCCCTACACATCGTGGATTCCAATAACgttagtatcaaa-----tccc---gttttctttcaccccaaacattaaactttgagatgtct---tactctc---taaattctgactttagctt----tgattattttgtcttag--
| ||||||||||||||||||||| || |||| ||| |||||  ||||||||||||| || ||||||||||| || |||||||| || ||||  |||| |||     | ||    || | |  ||      | |||     || |  ||  |    ||| ||    |||     || ||   ||      |     |||| |||   
GCTGGTTACCTATGGTATGAATATATCTACAGGCTAGACAAAATTACATACAACAAGTACCATCCCTACACGTCATGGATTCCTATCACgtacgtataaaaaacactaccatgattatatggcatgtggtaaattgtttctttaattgaatagacactttcagcaaaaagaaaacattgaattgacacaacaccgttgttttacag

upper sequence: AT2G34410.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os01g44040.2 (Oryza sativa), 5'ss of exon 11
GTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCATCCCTACACATCGTGGATTCCAATAACgttagtatcaaatcccgttttctttcaccccaaacattaaactttgagatgtcttactctctaaattctgactttagctttgattattttgtcttag
| ||| ||  | ||||| || || || ||||| || |||||  ||||||||||||| || ||||| |||||||| |||||||| || |||| |||||  ||    |    | |  |    | |  |     ||||        |  |    | |    |  ||       |               
GCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATACAACAAGTACCATCCGTACACATCATGGATTCCTATCACgtgagtatagaaatatgc---cataaaatatatatgtgggcttttgtatcag--tgttaatgataccacggtttccatgcag---------------

upper sequence: AT2G34410.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 6
GTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCATCCCTACACATCGTGGATTCCAATAACgttagtatcaaa----tcccgttttctttcaccccaaacattaaactttgagatgtcttactctctaaattctgactttagct-----ttgattat-tttgtcttag
||||| |  || ||||||||||| ||||||||||| ||||| |||||||||||||| || |||||||||||||| ||||| || |||||||  |||| | |    |  | | |  |   |  | |      | |      |    |    |   || |   |   |  || |     |  | | | ||| | | ||
GTTGGCTTTCTGTGGTATGAATATATATACAAGCTAGACAAAGTTACATACAACAAGTACCATCCCTACACATCATGGATCCCTATAACgtacgtataagaaatttaacatgtattcataatcgatgtggcacatgccatgccagcaatatgcttagagcttagttgcagttgacaatgaactgtgtttctttcag

upper sequence: AT2G34410.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G076394_T01 (Zea mays), 5'ss of exon 11
GTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCATCCCTACACATCGTGGATTCCAATAACgttagtatcaaatcccgttttctttcaccccaaacattaaactttgagatgtcttactctctaaattctgactttagctttgattattttgtcttag
|  || || || ||||| ||||| || |||||||| |||||   |||||| ||||| || ||||||||||| |||||||||||||||||||  | || | |  | ||| ||   | ||  ||  | | | | |||   |  || |  |      |||| ||                         
GCCGGCTATCTGTGGTACGAATATATCTACAAGCTGGACAAACATACATATAACAAGTACCATCCCTACACGTCGTGGATTCCAATAACgtatgcataacaaactgttatcaccccccaaaagaacttatcattg---tagctgatccatatgtttcttacag-----------------------

upper sequence: AT2G34410.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 12
GTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCATCCCTACACATCGTGGATTCCAATAACgttagtatcaaatcccgttttctttcaccccaaacattaaactttgagatgtcttactctctaaattctga-ctttagctttgattattttgtcttag--------------------------------------------------------------------
||||| ||| | ||||||||||||||||||||||| ||||||||  ||||||||||    || |||||||| || ||||||||||| |||| ||| | |     |  ||| ||| |  ||      |   ||||  | | ||||  | ||     | | | ||| |    |    ||  |    ||                                                                     
GTTGGGTACTTGTGGTATGAATACATATACAAGCTGGACAAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta----tccatttattttattccttttgctgttctttatgttttctttgtttccttcctttaagcttgaaagatagcaatcctagactaatatatggaatgcatttatatttttcttttcagctccttctattgattcttttgcctattatttttcag

upper sequence: AT2G34410.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 12
GTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCATCCCTACACATCGTGGATTCCAATAACgttagtatcaaatcccgttttctttcaccccaaacattaaactttgagatgtcttactctctaaattctgactttagctttgattattttgtcttag---------------------------------------------------------------------
||||| ||| | ||||||||||||||||||||||| || |||||  ||||||||||    || |||||||| || ||||||||||| |||| ||| | || |     ||| ||| |  ||      |   ||||    |   ||  |  ||   ||    ||| |    |    ||  |    ||                                                                      
GTTGGGTACTTGTGGTATGAATACATATACAAGCTGGATAAGGTCTCATACAACAAGCTCCACCCCTACACCTCATGGATTCCAATTACgtgagtgttaacta----tttattttattccttttgctgttctttatttttctttgtttccttcctttaagcttgaaagatagcaatcctagactaatacatggaatgcattttatatttttctgttcagctccttctattgattcttttacctattatttttcag

upper sequence: AT2G34410.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 6
GTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCATCCCTACACATCGTGGATTCCAATAACgttagtatcaaatcccgttttctttcaccccaaacattaaactttgagatgtcttactctctaaattctgactttagctttgattattttgtcttag-----------------------------------------------------------------------------------
||||||||  | |||||||||||||| |||||||| ||||| |||||||| || || |  |||||||||||||| ||||||||||||||||  || | ||    |  | ||| ||  | ||  | |    |||       |||  || || || || ||    |   ||      || | |  |                                                                                     
GTTGGTTATTTGTGGTATGAATACATTTACAAGCTGGACAAAGTTACATATAATAAGTTCCATCCCTACACATCATGGATTCCAATAACgtatgtgttaagagtctctctctctc-tctcactcttctttcttctctcattctctctgtc-aatttatggaaatgtattaaggagttctatagtgtggcatgaagaatatcagatctaattgaacattccagtttagtctcagtatctcattatcatctttgttttattgtgattccag